Cucurbita moschata (crookneck pumpkin): 111464240
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Entry
111464240 CDS
T05248
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111464240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmos03041
]
111464240
03009 Ribosome biogenesis [BR:
cmos03009
]
111464240
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111464240
Spliceosome [BR:
cmos03041
]
Complex A
U1 snRNP components
U1 related factors
111464240
Complex B
111464240
Ribosome biogenesis [BR:
cmos03009
]
Eukaryotic type
Pre-60S particles
Helicases
111464240
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
111464240
NCBI-ProteinID:
XP_022964154
UniProt:
A0A6J1HMJ4
LinkDB
All DBs
Position
Unknown
AA seq
1159 aa
AA seq
DB search
METGESAPPSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPVSLPPPLP
LAPHPSASTSKPTSIPEGHSMPSNGTLTPHVQQNHHVPQQEGQSNSQLSQQPGHLMSQQH
SSVAGQAIVNHHPSMQMAPDGRQHSLQPNQVLQQQGMFPMSLQHIGQQQVMHQGQKMAHA
NQQISQHPNQQPLQNTGQQIPQPSIQHLGQPNMQNQTPLVGQPQGPQYGQQHPQYMGYQQ
SVHPSVQQNSQQQVQKSPLGQPFGNHLEQKSAFQKREEDNIQSGNQIGFSTSQFQQSGGT
SSIHSVHPGTNSSQMQQYGLPSDQARQFGGSPGNMQQPHPVVQLQHSGTELTHRQHHSRF
QDPMGPAAMQEKQAGSENLPGRAGNEYFFGRNEGPGIGPHQPRLAAIPMARSQQDARMSG
VPFPSAAPSHPSGTSFAAGQSHNMYNHGSGGPSLSNNALMGPPHIGASDVTNMSPVEVYR
QQHEVTATGDNVPAPFMTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVAI
AKTGSGKTLGYLIPAFVLLRQCRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRASRICC
TCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKMINFRQVSLLVLDEADRMLDMGF
EPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNSVQVNIGSVDELAANKAITQYV
EFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNLGRGFGAAAIHGDKSQGER
DWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINFDFPTGIEDYVHRIGRTGRAGATGM
AYTFFCEQDWKYAADLIKVLEGADQLVPPELRDMAMRGGPSFGKDRGALGRFDAAMGGSR
WDSGGRGGMRDGGFGGRGGARDGGFGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGLAGG
RGGRGDFFSGRGRGGRAFGGPPGGHVGWARGDRGGPQDRYSSVDGRGRGRGQGRFDNRRD
FSNRSRGRSYSRSPERVRTWGYSRSRSRSRSRSGSRSSRSWSRSRSRSRSRSWSRRYSRS
RSRSHDNHERSHEKNFDRKDDIPPESVTATSPGTRKNAIEIREDGRQLPPADSNNIKPGN
PENGADTNDQIVNAAAQVI
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggaaactggggagtctgctcccccttcccttggtcctcgctatgcaccggacgaccct
actcttcccaaaccttggaagggattgattgatgggagcactggactgttgtactactgg
aaccctgaaaccaacgttactcagtatgaaaaaccagtctctttgccaccaccattacca
ctcgctcctcatcctagtgcctctacttccaagcctacttcaatcccggagggtcattca
atgccatcaaatggcacactaacccctcatgtacagcaaaatcatcatgtccctcaacag
gaaggccaatcaaacagccagctttctcaacaacctggacatctgatgtcacaacagcac
agttctgttgcaggtcaggcaattgttaatcaccatcctagcatgcaaatggcaccagat
gggcgacaacatagcttgcaaccgaaccaggttttgcagcaacaggggatgtttccgatg
tcgttgcagcatattggccagcagcaggtcatgcatcaaggtcagaaaatggcacatgct
aatcaacaaatatctcagcatcctaaccagcaacccctgcagaatacaggacaacaaata
ccacagccctcaatccagcatttaggacagccaaacatgcaaaatcaaaccccattagtt
ggccagcctcaaggtccgcaatatggtcagcagcatcctcagtatatgggttaccagcaa
agcgtacatccaagtgtgcagcaaaattcccagcagcaagttcaaaagagccctttaggg
caaccatttggtaatcaccttgagcagaagtcagcttttcagaagagagaggaggataat
atccagtcaggaaaccaaattggattttctacctcccagtttcaacaaagtggtggtaca
tcatctattcatagtgttcatcctggaaccaattcttctcaaatgcaacaatacggttta
ccttccgatcaagcacgacaatttggtggttctccaggaaacatgcaacagccgcatcct
gtggttcaattgcagcattcaggtactgaattgactcatcgccaacatcattctagattc
caagatccaatgggcccagctgcgatgcaggagaagcaagctggttctgaaaatttgcca
ggcagagctggaaatgaatatttctttggcaggaatgaggggcctggaattggtccacat
caaccaaggcttgcagcaataccaatggcaaggagccagcaggatgcaaggatgagtggt
gtcccatttccaagtgcggcacccagtcatcccagtggaacaagttttgcagccgggcaa
tcacataatatgtacaaccatgggtctggtggtccatcattgtcaaacaatgctttgatg
ggtcctccccatattggagcttcagatgttactaatatgtcacctgttgaagtttatcgt
caacagcatgaagtaactgccacgggtgataatgttccagctccattcatgacatttgag
gctactggcttccctccggagatactgagagagatatattctgctggtttctcatctccc
acgccaattcaagcacaaacatggccgattgccctgcaaggtagagacatagtcgcaatt
gctaaaacagggtctgggaaaactttgggctatttgattcctgctttcgttcttctaagg
cagtgccgaaataaccctcaaaatggaccaacggtgttggttttggctcctactagggag
cttgctactcaaatacaagatgaggcgattaaatttgggagggcttccaggatttgttgt
acgtgcttgtatggtggtgctccgaaaggtcctcagcttaaagagttagatcgcggggct
gatattgttgtggcaactcctggccgacttaatgatatactagaaatgaaaatgatcaac
tttaggcaagtttcacttcttgtgcttgatgaagctgatcggatgcttgacatgggattt
gaaccccaaattagaaagattgtgaatgaaataccaccacgcagacaaactcttatgtat
acagcgacctggcccaaggaagtaagaaaaatagcaaatgatcttcttgtcaattctgtc
caggtgaatattggaagcgttgatgaacttgccgctaacaaggctatcacacagtatgtt
gaattcgttccacagatggaaaaacagagacggttggagcagatcctcaggtctcaggaa
cgggggtctaaggttataattttttgttccacaaagagattgtgtgatcagcttgcacgg
aatcttgggcgtgggtttggggctgctgcaattcatggagacaaatcgcaaggagagcgt
gattgggtattgaaccagtttcgcagcggaaagtccccgatactagttgccacagatgtt
gctgcccgcgggcttgacatcaaagatataagagtggtgatcaactttgattttccaact
ggaattgaggactatgtccaccgaattggaagaactgggagggctggagcaacgggaatg
gcctataccttcttttgtgaacaggattggaaatatgctgctgatttgattaaagtactg
gagggtgcggatcagcttgtgcctcctgagttgcgagatatggctatgcgtggggggccg
agttttggtaaggataggggcgctttgggtcgtttcgatgcagctatgggtggcagccgc
tgggattctggaggccgaggtggcatgagagatggtgggtttggtggtcgtggtggtgca
agggatggcgggtttggtggccgcggtggaatgagagatggcgggtttggtggccgcggt
ggaatgagagatggcgggtttggtggccgtggtggaatgagagatggtcttgctggtgga
cgaggtgggagaggtgatttcttctctggacgaggtagaggaggacgggcctttggtggc
cctcctggaggtcatgttggttgggccaggggtgatcgtggtggcccacaggataggtac
agtagtgtggatggacgtgggcgtggacgtggacagggtcgatttgacaacagaagagac
ttctccaataggagtagaggcagaagttatagtcgtagccctgaaagagttcgaacatgg
ggctacagccgaagtcgcagccgcagccgcagccgcagcggtagtcgtagtagtagaagt
tggagtcggagtagaagtcgtagcaggagcaggagttggtcacgtcgctatagccgaagc
cgtagccgtagccatgataatcacgagcgatcacatgagaagaacttcgatagaaaagac
gacatacctccagaatcagtaactgctacttctccgggcactcgaaagaatgctatcgaa
ataagagaagatgggaggcagcttcctccagcagacagtaacaacatcaaaccggggaac
ccagaaaatggtgcagatacgaacgatcaaattgtaaacgccgcagctcaagtaatatga
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integrated database retrieval system
