KEGG   Cucurbita moschata (crookneck pumpkin): 111464261
Entry
111464261         CDS       T05248                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111464261
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmos03019]
    111464261
Messenger RNA biogenesis [BR:cmos03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111464261
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     111464261
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 111464261
NCBI-ProteinID: XP_022964148
UniProt: A0A6J1HJZ1
LinkDB
Position
Unknown
AA seq 128 aa
MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRAQKAEREATDLKGTIRK
RLEFLDLD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcaagcgcggaagatatttacctttcaacttctcttgccaattaccttgac
aagaaggttcttgtactacttcgagatggtcgaaagctattaggaatcctccggtcattc
gatcaatttgcaaatgctgttcttgaaggatcatgtgaaagagtgattgttggtgatctt
tacagcgatattcctttaggtctctatgtaattcgaggcgaaaacgtcgttttactgggc
gagctgaacatggagaaagaggagctccctccacacatgactcatgtctctgctgtggag
attaaaagggctcaaaaagcagagagagaggctacagatcttaaagggacaatcaggaaa
agacttgagttccttgatctggactaa

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