KEGG   Cucurbita moschata (crookneck pumpkin): 111464665
Entry
111464665         CDS       T05248                                 
Name
(RefSeq) THO complex subunit 4B-like
  KO
K12881  THO complex subunit 4
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013  Nucleocytoplasmic transport
cmos03015  mRNA surveillance pathway
cmos03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111464665
  09122 Translation
   03013 Nucleocytoplasmic transport
    111464665
   03015 mRNA surveillance pathway
    111464665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmos03019]
    111464665
   03041 Spliceosome [BR:cmos03041]
    111464665
Messenger RNA biogenesis [BR:cmos03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     111464665
    TREX complex
     111464665
Spliceosome [BR:cmos03041]
 Complex C
  Other components
   EJC/TREX
    111464665
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    111464665
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3 Kdo_hydroxy MrpR_C_cat
Other DBs
NCBI-GeneID: 111464665
NCBI-ProteinID: XP_022964653
UniProt: A0A6J1HLI4
LinkDB
Position
Unknown
AA seq 242 aa
MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG
NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ
IN
NT seq 729 nt   +upstreamnt  +downstreamnt
atggcagagcctctcgatatgagcttagatgatatcatcaagaacaacaagaaatctgga
tcctcgaacttcaggggtcgtggcggagcttcttctggaccaggtccctctcgccgcttt
cgcaatcgcggtcttaatagagcagcgccctattctactgcccaggcgccggagacggct
tggtcacacgacatgtttgtagatcatggttcggcatatccttcacagcctgcacgggcc
tctgctatcgaaaccggcaccaagctttatgtttctaatttggattatggtgtttccaac
gaggatatcaaggaactgttttcagaagttggtgatctcaaacgatattctatcaattat
gataaaagtgggaggtcaaagggaacagcagaaattgttttttcacgacaagcagatgcg
cttgctgctataaagaggtacaacaatgttcagctagatgggaagcacatgaagttggag
attgtaggaactaacatcgtgacacctgctgttcctgcttctgcaaatggcaattttggg
aatccaaatggatttcgaagaggtggacatgtactgggccgaaatcggggtggtggacga
ggacgtggtcctggaagaggaggacgtggacgtgggagtagcagcagaggtcgtggggag
aaattatctgccgaagatctagatgctgatttggagaagtatcatgaagaagccatgcag
atcaattaa

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