Cucurbita moschata (crookneck pumpkin): 111464888
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Entry
111464888 CDS
T05248
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmos03016
]
111464888
Enzymes [BR:
cmos01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
111464888
Transfer RNA biogenesis [BR:
cmos03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
111464888
Prokaryotic type
111464888
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
111464888
NCBI-ProteinID:
XP_022964935
UniProt:
A0A6J1HM83
LinkDB
All DBs
Position
Unknown
AA seq
511 aa
AA seq
DB search
MAVSSLRFPLSPWANKTSFPCFRFPYPNFVSWTSRLSPRLLCCSSSSTASTDALSTQCAP
DQLRKWEAFRKKKVVMRIGYVGTDYRGLQMQREQSSHPTIEQELEAAIYKAGGIRESNYG
DLNKISWARSSRTDKGVHSLATTITLKMEIPDSAWMGDPCGILLANYINFYLPENIRVFG
IVPSQRSFDPRRECDVRKYTYLLPAKLIGIESKLTTTEIDYHISEFKDILNSFQGEHPFH
NYTIRSKYRTRIRTNQSPGYVHKSGDGVSSSDLSNSEFEESDGENDIFVGGIKEPNQHSP
SLSGSYENTFEVCSKLGNGSELPQGVRARWLHEPDEKDRIGASHFRKILYCSCGKLETSL
GYDFVEISIWGESFMLHQIRKMVGTAIAVKRKLLPRDIIALSLSKFSRIVLPIAPAEVLV
LRGNRFSNRKRPGAPKRPDLLTLNESHDIVKSVNEFYRSAILPEVTNFLDIERPPWKEWV
EKLDKYTSIPNEQLEEVRNAWKAWTGKGRLS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcagtctcttctctgcgattcccgctttccccatgggcaaacaaaacttcatttcca
tgcttccgttttccctaccctaatttcgtttcgtggacctctcgtctgagtcctagactg
ctgtgctgttcctcatcttctactgcttccaccgatgctctttccactcagtgcgcccca
gaccagctccggaaatgggaagcttttcggaagaagaaggtcgttatgcggattggctat
gttgggactgattatagagggctgcaaatgcaacgcgagcaatcatcacatccaacaatt
gaacaagaattggaagctgcaatatataaagctggtggaattcgtgaaagtaactatgga
gatctgaacaaaatctcatgggcaaggagtagtcgaactgataaaggagttcattccttg
gctacaacaataaccttaaaaatggaaatccctgatagtgcatggatgggcgacccttgt
ggtattttgcttgctaattacatcaacttttatcttcctgaaaatatcagggtttttggc
attgtaccttcacagaggagctttgatcctagaagggagtgtgatgttcggaagtatact
tatctcctccctgctaagcttattggaattgaaagtaagctcacaactactgaaattgat
tatcacatctcagaatttaaggatatattaaattcgtttcagggggagcacccttttcat
aactatacaatacgttccaagtatagaacaaggattcgaaccaaccaatctccaggatat
gtccacaagtcaggagatggggtatcatctagtgatttgtcgaactctgagtttgaggaa
agtgatggagaaaacgatatttttgttggaggaatcaaggaaccaaatcaacattctcca
agcttaagtggtagttatgagaatacatttgaagtatgcagtaaacttggaaatggatca
gagcttccacagggtgttcgtgcaagatggcttcatgagccagatgagaaagatcgtata
ggcgcctcacacttcagaaaaatcctatactgttcttgtgggaagctggaaacatctctt
ggatatgatttcgttgagatctccatctggggagaatctttcatgttgcatcaaattcga
aagatggtaggcacagccattgccgtgaagcggaaactgctcccaagagatatcatagca
ttgtcactgagcaagttctctagaatagttctgcccattgctccagctgaagtcttagtc
ctaagagggaacaggttttccaacagaaaacgaccaggagctccaaagaggcccgacttg
ctcacattaaacgaatcccacgacattgtcaagtcagtgaatgaattctacagatcggcg
atattacccgaggtaactaactttctagacatagaaagacccccatggaaagaatgggtg
gagaaattggacaagtacacaagcattcccaatgaacaattggaggaagttaggaatgct
tggaaggcatggacaggaaaaggtagattgtcttga
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