Cucurbita moschata (crookneck pumpkin): 111464889
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Entry
111464889 CDS
T05248
Name
(RefSeq) structure-specific endonuclease subunit SLX1 homolog isoform X1
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
111464889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111464889
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
111464889
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GIY-YIG
Motif
Other DBs
NCBI-GeneID:
111464889
NCBI-ProteinID:
XP_022964936
UniProt:
A0A6J1HKB9
LinkDB
All DBs
Position
Unknown
AA seq
394 aa
AA seq
DB search
MRRRKEKPEIPKTMAVAEEKKEDDEDEERGNEGNRFFSCYLLASACPRYKGHTYIGFTVN
PKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
ATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQVSPI
DELPCYSEGDRCVLENENDWEYNREYKEVCDSQVHDLMTEVPNEIPQTLMDYQTGTDGRP
HELRGSDEELEDNEQVPHSSCTPSYIDVSVSYDLRGCDEQEPALCAQPCIVEGRTEIIID
DGEENHLEGSGTKLQQQPGRKNLSGIATEISEVSYGLPPVENEVIDVSTPSPDCRTSSYK
FKRRVITDSIFNPFRGNVGSNLVDQIERGTITCC
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgcggaggaggaaagagaagccggaaatccctaaaaccatggctgttgcagaggagaag
aaggaagacgatgaagatgaagaaaggggtaacgaagggaaccgtttcttttcatgctat
ctcttggcctctgcgtgccctcgttacaaaggccatacctatattggattcacagtgaac
cctaaacgtagaatcagacagcacaatggcgaaattagatgcggtgcgtggcgaactaag
aggaagagaccttgggagatggtgttctgcatctacggcttccccaccaatgtctctgct
cttcagtttgaatgggcctggcagcatcctaatgagtcattggccgtaagaagtgctgct
gcaactttcaagtctctatctggaattgccaacaaaattaaacttgcatacacaatgctc
acacttccagcttggtgtagtttgaatattactgtaaactacttctcaacaaagtacatg
aataatgcggctggttgcccaagtttgccagggcatatgagggtccaagtttcccccatc
gatgagctcccatgctattccgaaggagatcgatgtgtgcttgaaaatgaaaatgactgg
gagtataatagagaatataaagaagtttgtgattctcaagtacatgatttgatgactgaa
gttccaaatgaaattcctcaaacgttgatggattaccagacaggtacagatggaagacct
catgaattgcgtggatccgatgaagaactagaggacaatgaacaagtgccacattcttcg
tgtactccgtcttatattgatgtcagtgtgtcttatgacttgcgtggatgtgatgaacaa
gagccagctttgtgtgctcagccttgtattgtagaaggtaggactgaaatcatcatcgat
gatggagaggaaaaccatttagaagggagtggtacgaaattgcagcagcaacctggtagg
aagaacttatcaggaatagctactgaaatcagcgaagtttcatatgggcttcctcctgtt
gagaatgaggttatagacgtgtctaccccgtctcccgactgcagaacaagttcgtataaa
ttcaagagaagagttattactgatagtattttcaaccctttcagaggcaacgtgggctca
aatttggttgaccaaatagagaggggaacaataacatgttgttaa
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