Chamaesiphon minutus: Cha6605_2787
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Entry
Cha6605_2787 CDS
T02414
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family
KO
K03090
RNA polymerase sigma-B factor
Organism
cmp
Chamaesiphon minutus
Brite
KEGG Orthology (KO) [BR:
cmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmp03021
]
Cha6605_2787
Transcription machinery [BR:
cmp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cha6605_2787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_r3
HTH_38
HTH_23
Sigma70_ECF
HTH_24
HTH_10
HTH_3
HTH_28
Xre-like-HTH
LacI
TnsD
HTH_8
HTH_Crp_2
KORA
KfrA_N
GerE
Apolipoprotein
HTH_1
HTH_29
Motif
Other DBs
NCBI-ProteinID:
AFY93824
UniProt:
K9UI12
LinkDB
All DBs
Position
complement(2898581..2899360)
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AA seq
259 aa
AA seq
DB search
MATQASAHSESMSLLMNYYQQPSIKVRNQLVLLNAGLVRQIAHRIGRQCAEPYQDLEQIG
YLGLIRAIERFNPHQGCAFSSFAVPYIRGEVLHFLRDKSSVLKIPRRWQELQKEGEKVRQ
QLTAKLGRKVRDEEIAAVLNVSVSEWRETQAAEHNRQALSLDATVGQMLDCPVTLGDSLP
DTREQQRQYLEEERQQLSGAISELESKTKQAIEYVYIKGLPRKEAAKRIGVSPMTVTRHL
QRGVKQLSTLLHPEEPVMT
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atggctactcaggcttctgctcattccgaatcgatgtctttactgatgaattattatcaa
cagcccagcatcaaagtccgcaatcagttagtcttgttaaatgctggtctcgtcagacag
atcgctcaccggatcggtcgtcaatgtgcagaaccatatcaagatttggaacaaattggt
tacttaggcttgattcgcgcgatcgaacgttttaatccccatcaaggttgtgcgtttagc
tcgtttgcagttccctatattagaggcgaagtcttacacttccttagagacaagagcagt
gtgttgaagattcctcggcgttggcaagaacttcagaaagagggtgaaaaggttcgtcag
caattgacagctaaattaggtagaaaagttcgggatgaagaaattgcggcggtactgaac
gtctctgtcagcgagtggcgtgagactcaagccgcagaacacaaccgtcaagctttaagt
ttggatgcgacagtcggtcaaatgttagattgccctgtgactttaggcgatagtttgcca
gacacccgcgaacaacaacgtcaatatctcgaagaagaacgccaacaactcagcggtgcg
atttccgaactcgaatccaaaaccaaacaagcgatcgaatacgtttatatcaaaggacta
ccccgcaaggaagctgctaaaagaatcggtgtcagtcccatgactgtcacccgccacctt
caacgcggtgtcaagcaattatccaccctcttacaccccgaagagcctgtaatgacctaa
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