Chamaesiphon minutus: Cha6605_3005
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Entry
Cha6605_3005 CDS
T02414
Name
(GenBank) DNA-directed RNA polymerase, gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cmp
Chamaesiphon minutus
Pathway
cmp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cha6605_3005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmp03021
]
Cha6605_3005
03400 DNA repair and recombination proteins [BR:
cmp03400
]
Cha6605_3005
Enzymes [BR:
cmp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cha6605_3005
Transcription machinery [BR:
cmp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cha6605_3005
DNA repair and recombination proteins [BR:
cmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cha6605_3005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
AFY94037
UniProt:
K9UFZ6
LinkDB
All DBs
Position
complement(3134042..3135916)
Genome browser
AA seq
624 aa
AA seq
DB search
MRQKLETKFDYVKIGIASPDRIREWGSRNLPNGQLVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVAHVWYLKG
IPSYLSILLDMPLRDVEQIVYFNSYVVLAAGNDDTLGYKQLLTEEQWLEIEERIYSEDSQ
LEGVEVGIGAEAVQRLLEDLQLEEEAEKLREQISESKGQKRAKLIKRLRVIDNFIATGSR
PEWMILSYVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKIHQCGLPREMAIELFQPFVIHRLIKNNLVNNIKAAKKLIQRGDPTVWDVLE
EVIAGHPVMLNRAPTLHRLGIQAFEPIIVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGSPIVAPSQDMVLGCYYLTARNPELAETDRYFANLDDA
VRAYDRGELNIHSFIWVRYDGLMESDDEEKDPLETIDNGDGTTTRLYKYRRIRETSTGEL
LSQYIYTTPGRIIYNKTIQEVLSV
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcaaaagctagaaaccaagtttgattacgttaagattgggatcgcttcacccgat
cggattcgagagtggggttcgcggaacttacccaacggacaattagttggcgaagtcacc
aaaccagaaaccatcaactatcggacattgaagccggaaatggatggtttgttctgcgaa
cggatttttggccctgccaaggattgggaatgccattgcggtaaatacaaacgggtgcgc
catcgtggcatcgtctgcgaacgttgtggagttgaagttaccgaatcccgcgtgcgccgt
caccggatgggctttatcaaactagctgcgccagtggctcacgtttggtacctcaaaggg
attcccagctacttgagcatcctgctcgatatgcccttgcgcgatgtcgaacaaatcgtc
tacttcaactcctatgttgttttggccgcaggtaacgatgatactctcggttacaaacaa
ctgctgactgaagaacagtggttagaaattgaagaacggatctatagtgaagactctcaa
ctcgaaggagtcgaagtcggcattggtgcagaagccgtccagcggctcctagaagacctg
caattggaagaagaggctgaaaagctccgcgagcagattagcgagtccaagggtcaaaaa
cgcgccaagttgatcaaacgcctgcgggtgatcgataacttcatcgcgacaggtagtcgt
cccgaatggatgattctcagttacgtgcctgtaattccccctgatttgcgcccaatggtg
caactcgatggcggtcgatttgcgacttcggacttaaacgatctctatcgccgtgtcatc
aaccggaataaccgtctggcgagattgcaagaaatcttagcacccgaaatcatcgtccgc
aacgagaaacggatgcttcaagaagccgtcgatgcgctgatcgataacggtagacgcggt
agaaccgtagtcggtgccaataaccgcgccctcaaatccctatccgatattatcgaaggg
aaacagggacgcttccggcagaacttgctcggtaaacgggtcgattattccggacgttcg
gtaattgtcgtcgggccaaaactgaaaatccaccagtgtggattgcctagagaaatggcg
atcgaattattccagccgtttgtgatccatcggttgatcaaaaacaacttggtcaataat
atcaaagctgccaaaaaactgatccaacgtggcgatccaaccgtgtgggatgtcctcgaa
gaagtcatcgccggacacccagtgatgctgaatcgggcaccaaccctgcaccgtttgggg
attcaagccttcgagccgattatcgtcgaaggtcgcgcgattcaactccatccgctagtt
tgcccagcatttaatgccgacttcgacggagaccagatggcggttcacgtaccgttgtcc
ttggagtctcaagccgaagcccgactgctaatgttggcgagtaataacattctctcacca
gcaacgggttcgccgatcgtcgcaccttctcaggatatggtcttgggttgttattatctg
accgctcggaatcccgaactcgccgaaaccgatcgctattttgccaatctagacgatgcc
gttcgtgcatacgatcgcggcgagctgaatatccacagctttatctgggtcagatacgac
ggtttaatggaatccgacgatgaagaaaaagacccattagaaacgatcgacaatggcgac
ggtacgaccaccagactctataaataccgccgcattcgcgaaaccagcacaggtgaactg
ctctctcaatatatctataccaccccaggccggattatttacaacaagaccattcaagaa
gtcctctcggtatag
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