Chamaesiphon minutus: Cha6605_4648
Help
Entry
Cha6605_4648 CDS
T02414
Name
(GenBank) RNA polymerase sigma factor, cyanobacterial RpoD-like family
KO
K03086
RNA polymerase primary sigma factor
Organism
cmp
Chamaesiphon minutus
Brite
KEGG Orthology (KO) [BR:
cmp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Cha6605_4648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmp03021
]
Cha6605_4648
Transcription machinery [BR:
cmp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cha6605_4648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AFY95566
UniProt:
K9UM88
LinkDB
All DBs
Position
4923391..4924533
Genome browser
AA seq
380 aa
AA seq
DB search
MTQTKDMLATLTTKDSDSELELLLDEDVDADDFTADPEGESDVEDEDGKLGKVKASRRRV
QTKKKQFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLDREPHD
REWAAVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLG
LIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLS
QEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGEMPE
DQVSKSLLREDLEGVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA
KALRKLRHPNRNSILKEYIR
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgacccagactaaagacatgctcgcaaccttaacgactaaagactccgacagcgagtta
gaattactgctcgacgaagatgttgatgctgacgactttactgccgatcctgaaggagaa
tctgatgtcgaagacgaggatggtaagctggggaaggtgaaagcctcccgccgtcgcgtt
caaactaagaaaaaacaatttacagaagactcgattcgactttatctacaagaaatcggt
cgaattcgtctcctccgcgccgatgaagaaatcgaactcgctcggaaaattgctgacttg
ctcgaattggagcggatgcgtgaaaagctcctcaatgacttggatcgcgaaccacacgat
cgcgagtgggcagcagtcgcttcaatgccactaaatcagtttcgccatcggttattttta
ggcagacgcgctaaagataaaatggtacaatcgaacctccgactggttgtttcgatcgcc
aaaaaatacatgaatcgcggcctttctttccaagatttaattcaagaaggtagcttgggt
ttgatccgcgccgctgagaaattcgaccacgaaaaaggttataagttctcgacatatgca
acttggtggattcgccaagcaattactcgcgcgatcgccgatcaatcgcggacgattcgt
ctaccagttcacttatacgaaactatttcgcggattaaaaagactactaaactactttct
caagaaatgggacgcaaacccacagaggaagaaattgctacccgcatggaaatgacgatc
gaaaaactgcggtttattgccaaatccgcacagttaccgatctcgctcgaaacaccaatt
gggaaagaagaagactccagactcggcgactttatcgaagccgacggtgagatgccagaa
gatcaagtatccaagagcttgctacgcgaagatttagaaggtgtgctagataccttaagt
cctcgcgaacgcgatgtgctcagactgcgttatggcttagatgacggacggatgaaaaca
ttagaagaaatcggtcagatctttaatgttactcgcgaacgcattcgtcaaatcgaagct
aaagctctccgcaaactgcgccaccccaatcgcaatagcattcttaaagaatatattcgg
taa
DBGET
integrated database retrieval system
