Chamaesiphon minutus: Cha6605_5028
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Entry
Cha6605_5028 CDS
T02414
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
cmp
Chamaesiphon minutus
Brite
KEGG Orthology (KO) [BR:
cmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmp03016
]
Cha6605_5028
Enzymes [BR:
cmp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Cha6605_5028
Transfer RNA biogenesis [BR:
cmp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Cha6605_5028
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
DUF4253
Motif
Other DBs
NCBI-ProteinID:
AFY95932
UniProt:
K9ULF7
LinkDB
All DBs
Position
complement(5326406..5327029)
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AA seq
207 aa
AA seq
DB search
MEDFQICDRDLDDALTAKYLQAESIAVDTETMGLNYLRDRLCLVQLFSPGILTVIRIAKG
QTAAPNLQQVMQSTTVTKVFHFARFDVAQLRHRLGIETQPIFCTKIASKLIRTYSNRHGL
KELVAQLEGVELDKSAQSSDWGDAENLSDEQLRYAANDVRYLISMRQKLTTKLQREDRWE
LAQNCFKVLPTLVSLDLLQYEDIFSHH
NT seq
624 nt
NT seq
+upstream
nt +downstream
nt
atggaagactttcaaatttgcgatcgagatttagatgatgctttaactgccaaatatctt
caggcagaatcgatcgctgtcgataccgagactatgggactaaactatctccgcgacagg
ctatgtttggtgcaattattctcgcctggtatcctgacggtaattcggattgccaaagga
caaaccgccgcaccaaatttacaacaggtgatgcaatctaccactgttacgaaagttttt
cactttgccagattcgatgtggcacaactacgccatcggttgggaatcgaaacccagcca
atcttttgcaccaagattgccagcaaattgattcgcacttactcaaaccgtcacggcttg
aaggaattagtcgcacaactcgaaggtgtcgaactcgataaatctgctcaatcttcagat
tggggcgatgccgaaaatctctcggacgaacaacttcgctatgctgctaatgatgtccgt
tatttaattagtatgcgtcaaaaattaaccactaaattgcaacgcgaagatcgctgggaa
ttggcgcagaattgttttaaagtcttgccaactctggtttcgctcgatctattacagtac
gaagatatcttctctcatcattga
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