Chamaesiphon minutus: Cha6605_5589
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Entry
Cha6605_5589 CDS
T02414
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cmp
Chamaesiphon minutus
Brite
KEGG Orthology (KO) [BR:
cmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmp03016
]
Cha6605_5589
Enzymes [BR:
cmp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Cha6605_5589
Transfer RNA biogenesis [BR:
cmp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Cha6605_5589
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
AFY96464
UniProt:
K9UQF6
LinkDB
All DBs
Position
complement(5912390..5914408)
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AA seq
672 aa
AA seq
DB search
MEKGTLVEFWHNGERRLAIADRPEGKKHWIAIDARSQSHTLHPRDITYEVAGISCKQPAE
INKFTTEVAPNVDPDSLEVAWEMLVEDSELVDPPALADLLYSDRTPVLCYAAHILLSEDK
IYFKNKKEDKYEARSRTQVAELKHQASVKEQKEREQQGFIARIEQKLAGKAVEWQDTDKQ
RLEVLEKYVLNPDVPPQKLGEYLSALNVSQTQPAVFSLLVELGWWDIHENIHLRRSQTPV
HFSHKMQTVAHELLTNPPVDLDATRRRDLTHLKVYTIDDESTQEIDDGLSVETLPDGRQK
LWIHIADPTRLLSPDDEFDLEARKRSVTIYLPTGMIPMFPPELATGPMSLRQGQKCCALS
FGVILDESGAASEYEITTSTIEPTYRLTYEDVEEMLQLRIPGENEIEAIAKAAKLRNQWR
LSQGSININMPESTVKVSGDKVSIDLIEDNRARRLVAEMMILAGEVAAKYGQDNSLPLPY
RGQPQPELPPEEELILIPVGPARSCAVRRCMPRSEMATTPSRHASLGLNTYSQVTSPIRR
YTDLLSHFQIKAHLRGDELPFTVERLQEIMMGLGTSIYEATMVERQTNRYWTLEYLNRSG
DREWDALFLRWLREDESLALILIEELGIELAMRFNRWVALGEQIQVQVALVDPRQDIIHL
REISGQIVSSLA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtggagaagggaactctagttgaattttggcacaatggagaacgccgtctagctattgcc
gatcgtccagaagggaaaaaacactggatcgcgatcgatgctcgcagtcagtcgcatacg
ctgcatccgcgcgatattacttatgaagtagccgggattagctgcaaacagccagcagaa
atcaataaatttacaaccgaagtcgcaccgaatgtcgatcctgacagcttggaagtagct
tgggaaatgttggtagaagacagcgaactcgtcgatccgcccgctttagcagacttattg
tattctgatcgtactccagttctgtgttatgctgctcacatcttgctctccgaagacaag
atctatttcaagaacaagaaagaagacaaatacgaagcccgcagccgcactcaagttgcc
gaactcaaacaccaagctagtgtcaaagagcaaaaagagcgggaacagcaaggatttatc
gcccgcatcgagcagaagttagcaggcaaggctgttgagtggcaagacaccgacaaacag
cgactcgaagtcctcgaaaaatatgtactcaatcccgatgttcccccgcaaaaactaggt
gaatatctgtccgctctcaacgtgtcgcaaacccagcctgcggtattctcgctcctcgtg
gaattgggatggtgggacatacatgaaaacatccatttgcgacgttctcagactcccgtt
cacttctcacacaagatgcaaactgtggcgcatgaattactgacaaatcctcctgtcgat
ctcgatgcaacccgccgccgcgatcttactcacctgaaggtatacacgatcgatgatgag
agtacccaagaaatcgacgacggtttgagtgttgaaacattgccagatggccgccaaaaa
ttgtggattcatattgccgatcccacgcggttattatcgcccgatgatgaattcgatctc
gaagcgcggaaaagatctgtcacaatttatctgccaacagggatgattccgatgttcccc
cccgaactcgcaaccgggccaatgagcctgcggcaggggcaaaaatgctgtgccttaagt
tttggggtaatcttagatgaaagcggtgccgcgagcgaatatgagataactacgagcacg
atcgagccgacttatcgactcacttatgaagatgtcgaggaaatgctgcaactgcggatt
cctggcgaaaacgaaatcgaagcgatcgccaaagcggctaaactccgcaaccagtggcga
ctctctcaaggctcgattaatatcaatatgcctgagtctaccgtcaaagtcagcggcgat
aaagtctcgatcgatctgatcgaagacaatcgcgcgcgccgcttagttgccgaaatgatg
attctcgctggcgaagtagctgctaaatacggacaagacaattccctcccactcccttat
cgcggccaaccccaaccagaactcccgccagaagaagaactgattctcatcccagtcggc
cctgcacgctcctgtgccgtgcgtcgctgtatgcctcgtagtgaaatggcaactacgcct
tctcggcacgctagcttgggtttaaacacctattctcaagttacctctccaattcgtcgt
tatacagatttactctcccatttccaaatcaaagctcacctgcgcggcgacgaattacct
tttaccgtcgagcgattgcaggaaattatgatgggattgggaacgagtatttacgaagcc
acaatggtcgaacgccaaaccaatcgctactggacattagaatacctcaatcgatcgggc
gatcgcgaatgggatgctttattccttcgctggctgcgcgaggacgaaagtctggctcta
atcttaattgaagaattaggcatcgaactcgccatgcgattcaatcggtgggtcgctttg
ggcgaacaaatccaagtccaagtcgcactcgtcgatccgcgccaggatatcattcacctg
cgagaaatttccggtcaaattgtcagctcgttagcatag
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