Chamaesiphon minutus: Cha6605_5880
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Entry
Cha6605_5880 CDS
T02414
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cmp
Chamaesiphon minutus
Pathway
cmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cha6605_5880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmp03019
]
Cha6605_5880
03400 DNA repair and recombination proteins [BR:
cmp03400
]
Cha6605_5880
Enzymes [BR:
cmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cha6605_5880
Messenger RNA biogenesis [BR:
cmp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cha6605_5880
DNA repair and recombination proteins [BR:
cmp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cha6605_5880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_38
Motif
Other DBs
NCBI-ProteinID:
AFY96728
UniProt:
K9UPW5
LinkDB
All DBs
Position
6197578..6199809
Genome browser
AA seq
743 aa
AA seq
DB search
MLAGSNQFETLEHALKHYFGYDEFRSGQREIITTALANRDLLVVMPTGGGKSLCFQLPAL
LKNGVTIVVSPLIALMQDQVQLLANNGIPATFLNSSITTEEKRDRVAAIHNGEIKLLYVA
PERLNQEFISNFLVDLHQEVGIAGFAIDEAHCVSEWGHDFRPDYRKLAQLRHYFPKVPWL
GLTATATDRVRSDIINQLELREPHVHIASFNRPNLYYEVRRKTTAPYKELLAQVKQSEGS
GIIYCLSRKKVDELTTKLKQDGIKVVPYHAGLDGETRTKNQNSFIRDDVKVIVATVAFGM
GINKPDVRFVIHYDLPRNIEGYYQESGRAGRDGEPAHCTLYFGMGDIKTIEYLIAQKVDP
ETGMALEDEQRIATQQLRRVINYAEATECRRIIQLGYFGESFPGNCDNCDNCKYPRPISD
WTIEAQKLLSCVYRFGERHNGRTFGLAHTIDVLRGSKNDKVLKNGHDTLSTYGIGKDRSV
DEWRMLGRSLLHQGLVDETSDGYSVLTLNGLSMEILKSQRKVEIAISPIKPSVAANEVST
NTAEIQALYNRLHKLRKQYADANKVAPYVIFADSSLRLMAQQQPQTLAQFAQISGVGARK
LAQYGEMFTGEIRAFRAESGLPVLTESDPTPPLPVSAPTKSDVSHTHLQTLDLYNQGLSL
AAIAKKRSVQENTIYDHLVKLLDCGYEVDLDRIVPSDRAAAIAQAITAVGDEKLTPIKAH
LGDDYSYEEIKLVRAKIKPRSGE
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctggctcgaaccaatttgaaaccctagaacatgccttaaaacattacttcggg
tatgacgagtttcgatcgggacagcgcgagattattacgacggctttagccaatcgcgac
ttgttagtcgtgatgccgacaggtggcggtaagtcgttatgttttcagttaccagcgtta
cttaaaaacggcgtaacgatcgtggtttcgccgttgattgcgctgatgcaagaccaagtg
caattgctagcgaataatggcattccggcgacttttttgaatagtagtattactaccgaa
gaaaaacgcgatcgagtggcggcaatccataatggtgaaatcaaacttttatatgtcgct
cccgaacgattgaatcaggagtttatcagtaactttttggtcgatttgcaccaagaagtg
gggattgctggctttgcgatcgatgaggcgcattgtgtttcggaatggggtcacgatttt
cggccagattatcgcaaattagcgcaattacggcattatttcccgaaggtgccctggttg
ggattgacggcgacagcgaccgatcgggtacgctcggatattatcaatcagctagaactg
cgcgagccacacgttcatattgccagcttcaaccgtccgaatttatattatgaagttagg
cgcaaaacaactgcaccttataaagaattactcgcccaagtcaagcagtcggaaggatcg
ggaattatctactgtttgagtcggaagaaagtagacgaattgacgactaaactcaagcaa
gatgggattaaagtagtaccctatcatgcgggattagatggtgagactcggactaaaaat
cagaatagttttattcgcgatgatgtgaaggtgatagtcgcgacggttgcctttgggatg
ggtattaataaacccgatgtgcggtttgtgattcactacgatttgccgcgcaatattgag
ggttattatcaagaatcgggacgtgcgggacgggacggcgaacccgctcattgtacgttg
tattttgggatgggcgatatcaagacgatcgagtatttaatcgcccaaaaggtcgatccc
gaaacggggatggctctggaagacgaacagcgtattgcaacgcaacaattgcggcgggta
attaattatgccgaagcgacggaatgtcggcggattattcagttgggttactttggcgaa
agctttcctggtaactgcgacaattgcgataattgtaaatatccgcgcccaatttcggac
tggacgatcgaagctcaaaagctgttatcgtgcgtttatagatttggcgaacgccataat
ggtagaacttttggactggcacatacgatcgatgttttgcgcggttctaaaaatgataaa
gtcctcaagaacggacacgataccctgtccacttatggcatcggtaaagatcggagtgtc
gatgaatggcggatgctgggcagatctttactgcatcaaggtttagtcgatgaaaccagc
gatggttactccgtcttgacgctcaatgggttgagtatggaaattctcaaaagccagcgc
aaagttgaaatcgccatctctcccatcaaacccagcgttgcagctaacgaagtcagcacc
aataccgccgaaattcaggctctctacaaccgcctgcacaaacttcgcaaacaatacgcc
gatgccaataaagtggcaccttatgtcatctttgccgattcgagcttgagattgatggct
caacaacaaccccaaaccctcgcccaattcgcccaaatttccggcgtaggggcacgaaaa
ctcgctcagtatggggaaatgtttacaggcgaaattagagcctttagagccgaatctggc
ttgcccgtgctaacggaatccgatcctaccccaccactacccgtcagcgcaccgacaaaa
agcgatgtttcccacacccacttgcaaaccctggatttgtacaatcaagggttgagccta
gccgcgattgctaaaaaacgctccgtgcaggagaatactatttacgatcatctcgtcaaa
ttgttggactgcggctacgaagtcgatctcgatcgcatcgtaccatccgatcgagctgcc
gcgatcgcgcaagcaattacagcagtcggcgacgagaaactcaccccaattaaggcacat
ttaggcgatgactatagctatgaagaaatcaaactagtcagagcgaagattaagccgcgt
agtggggagtag
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