Corynebacterium marinum: B840_03765
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Entry
B840_03765 CDS
T03633
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmq
Corynebacterium marinum
Pathway
cmq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B840_03765 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmq03400
]
B840_03765 (mfd)
Enzymes [BR:
cmq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B840_03765 (mfd)
DNA repair and recombination proteins [BR:
cmq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B840_03765 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJK68373
UniProt:
A0A0B6TKB5
LinkDB
All DBs
Position
762474..766169
Genome browser
AA seq
1231 aa
AA seq
DB search
MAGTTPVKNPAMLAGLLKVAATDPKLKGMTANVGAGRLHLTGIDQVRPWAVGVLAHHAPV
LLVTATGREAEDLTAELRAMLGEKVVWFPSWETLPHERLSPGVDTIGQRARVLDLIAGGS
VSVVVTAARGFCQPLLETAEGREPIRLREGAEHDFAGLTEQLVFRAYNNVDMVARRGEFA
TRGGILDVFPTTADHPVRVEFWGDEVTEIRQFSVADQRTDPDIEVGSLEIYPARELPITG
DIAQRAGELALKHPGNATLVELLTKISDRIPADGMEALIPALVDTRMVTLPELMPADTHL
VLVGPEKIRTRIADLAATDAEFLAAGWEAAAMGASGPVAAEGLDLAASAYRSYESLQVTA
QKSGLPWWTFSPPGMFEADEAEVLPLDFEPGPTPRGDAAQIAEMMSLLLAHTTAGGRAAF
IAPAQGAIKRMVERFAEAGIPAKTATPGWEPSPGEVTLYQALSHGGVVFPKVRKHRDAEA
LPLVVITETDLTGNRVGDIAGAKRRPARKRNRVDPLALKTGDFVVHETHGIGRFLKMAER
TIHAGDETSRREYIVLEYAPAKRGQPADQLWVPMDSLELLSKYSGGESPTLSKMGGSDWK
NTKKKARAAVREIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPFVETEDQMLAIDA
VKSDMEAHAPMDRVIVGDVGYGKTEVAVRAAFKAVQDGRQVAVLVPTTLLAQQHQSTFEE
RMAGFPVTIRGLSRFTSTAESKEVLAGLADGSVDIVIGTHRILQTGVRWKNLGLIIVDEE
QRFGVEHKEHIKALRTNVDVLTMSATPIPRTLEMSMAGIREMTTILTPPEDRHPVLTYVG
AQEDKQIAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHGQMSEEQLE
KTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGY
AYFLYPKGATLTENSYDRLATIAQHNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVG
FDLYVRLVGEAVEAYKALARGEALDATDQGPKEIRIDLPVDAHIPESYINSERLRLEVYR
KLAASHNDTDLQLAVEEMEDRFGPVPEVVSRLLSVARLRHQARRAGVSEIIVQGTRIKVG
AVELPDSKQVRLKRLYPGSSYRAAAKAIQLSFPKAGRGAGQPNLRDVELIQWMADFLSAM
FDVAEVDVSGGVVAPEAPAKKQVFSVTEVKR
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggccggcacgacccccgtgaaaaatccggcgatgctggccggcctgctcaaggtcgcc
gcgactgacccgaagctcaagggcatgaccgccaacgtcggcgcgggcaggctccacctg
acaggcatcgaccaggtgcgcccctgggcggtgggcgtgctggcgcaccacgcgccggtg
ctgctggtcaccgccaccggccgcgaggccgaggacctcaccgccgagctgcgcgccatg
ctgggggagaaggtcgtgtggttcccctcctgggagacgctcccgcacgagcgcctgagc
cccggcgtggacaccatcggtcagcgggcccgcgtcctcgatctgattgccgggggttcg
gtgtcggtcgtcgtcaccgccgcccgcggtttctgccagcccctgctcgagacggccgag
gggcgcgagcccatccgtctacgggagggggcggagcacgacttcgccgggctgaccgag
cagctggtgttccgggcctacaacaacgtggacatggtggcccggcgcggcgagttcgcc
acccgcggcggcatcctcgacgtctttcccaccaccgccgaccatccggtgcgcgtggag
ttctggggcgacgaggtcaccgagatccggcagttctccgtcgccgaccagcgcacggac
ccggacatcgaggtcgggtccctggagatctacccggcccgcgaactgcccatcacgggg
gacatcgcgcagcgggcaggcgagctggcgctcaagcaccccggcaacgcgaccctcgtg
gagctgctgacgaagatctccgaccgcatcccggcggacgggatggaggcgctgatccct
gcgctcgtcgacacgcggatggtcacgttgccggagctgatgcccgcggacacccacctc
gtgctggtgggcccggagaagatccgcacccgcatcgcggacctggcggccaccgacgcg
gagttcctcgccgccggctgggaggccgccgccatgggtgcgtccggtcccgtcgccgcg
gagggcctcgacctggcggcctccgcctaccgctcctatgaatcgctccaggtcaccgcg
cagaaatccgggctgccgtggtggaccttctccccacccggcatgttcgaggccgacgag
gcggaggtcctgccgctggacttcgaacccggcccgaccccgcgtggcgacgccgcccag
atcgccgaaatgatgtcgctgctgctcgcgcacaccaccgcgggcggccgtgccgccttc
atcgcccccgcccagggcgcgatcaagcgcatggtggagcgtttcgccgaggcaggcatc
ccggcgaagacggccaccccgggctgggagcccagccccggcgaggtcacgctctaccag
gcgctcagccacggcggcgtggtgttccccaaggtgcgcaaacaccgggacgcagaggcc
ctgccgctggtggtcatcaccgaaacggacctgaccggcaaccgcgtcggcgacatcgcg
ggcgccaagcggcgccccgcgcgcaagcgcaaccgcgtcgatcccctggcactgaagacc
ggcgacttcgtcgtccacgagacccacggcatcggccggttcctcaagatggcggagcgg
acgatccacgcgggcgacgagacgtcgagacgcgagtacatcgtcctcgagtacgcccca
gccaagcgcggccagcccgcagaccagctgtgggtccccatggattcgctggagctgctg
agcaagtactccggcggagagtcgccgaccctgtcgaagatgggcggctccgactggaag
aacacgaagaagaaggcccgggccgccgtccgcgagatcgccggcgaactcgtcgagctc
tacgccaagcgccagtccgcccccgggcaccccttcgccccggacaccccgtggcagaag
gagatggaggacaacttccccttcgtcgagaccgaggaccagatgctcgccatcgacgcc
gtcaagtcggacatggaggcgcacgcccccatggaccgcgtcatcgtcggcgacgtcggc
tacggcaagacggaggtcgccgtgcgcgccgccttcaaggccgtccaggacggccggcag
gtggcggtcctcgtccccacgacgctgctcgcccagcagcaccagtccaccttcgaggag
cgcatggcgggtttccccgtgaccatccgcgggctctcccgtttcacctccaccgcggag
tcgaaggaagtcctcgcggggctcgccgacgggtcggtggacatcgtcatcggcacccac
cgcatcctgcagaccggcgtccgctggaagaacctcggcctcatcatcgtcgacgaggag
caacgcttcggcgtcgagcacaaggagcacatcaaagccctgcggacgaacgtcgacgtg
ctcaccatgtccgccacccccatcccgcgcaccctggagatgtcgatggccggcatccgc
gagatgaccaccatcctcaccccgccggaggaccgccacccggtcctcacctacgtcggc
gcgcaggaggacaagcagatcgccgcgtccatccgccgcgagctgctccgcgacggccag
gtcttcttcatccacaacaaggtcgccgacatcgagaagaaggcccgtgaactgcgcgac
ctggtgcccgaggcgcgcgtcgtcgtcgcccacggccagatgagcgaggaacagctggag
aaaaccgtccaggggttctgggaccgcgaatacgacgtcctcgtgtgcaccaccatcgtg
gagaccggcctggacatcgccaacgccaacaccctcatcgtggagaacgcccatcacatg
ggcctctcgcagctccaccagctccgcggccgcgtcggccgatcccgcgagcgcggctac
gcctacttcctctaccccaagggcgcgacgctcaccgagaactcctacgaccgcctggcc
accatcgcccagcacaacgacctcggagccggcatggccgtggcgatgaaggacctggag
atgcgcggggcgggcaacgtcctcggcgcgcagcagtccggccacatcgcaggcgtcggc
ttcgacctctacgtccggctcgtcggcgaagccgtcgaggcgtacaaggcgctggcccgg
ggcgaggcgctcgacgccaccgaccagggtccgaaggagatccgcatcgaccttcccgtc
gacgcgcacatccccgagtcctacatcaactccgagcggctgcgcctcgaggtctaccgc
aagctcgccgcctcccacaatgacacggacctgcagctggcggtcgaggagatggaggac
cgtttcggtcccgtccccgaggtcgtctcccggctgctctccgtcgcccgcctgcgccac
caggcccggcgcgccggggtctccgagatcatcgtgcagggcacccgcatcaaggtcggt
gccgtcgagctgccggactcgaagcaggtgcggctcaagcggctctacccgggttcgtcc
taccgggccgccgcgaaggcgatccagctgtccttccccaaggccggccgcggcgccgga
cagcccaacctccgcgacgtcgagctcatccagtggatggcggacttcctctccgccatg
ttcgacgtcgccgaggtcgacgtctccggcggggtcgtcgccccggaggcaccggctaaa
aagcaggtcttcagcgtcacggaagtcaagcgctag
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