Corynebacterium marinum: B840_07330
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Entry
B840_07330 CDS
T03633
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cmq
Corynebacterium marinum
Brite
KEGG Orthology (KO) [BR:
cmq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmq03019
]
B840_07330 (hrpA)
Enzymes [BR:
cmq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B840_07330 (hrpA)
Messenger RNA biogenesis [BR:
cmq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B840_07330 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
NACHT
ResIII
AAA_25
PhoH
TsaE
ABC_tran
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AJK69064
UniProt:
A0A0B6TS14
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All DBs
Position
1509277..1513185
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AA seq
1302 aa
AA seq
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MSTSSDAPVTRDALFERLAHVSLTDERSIRRRLHKARTPQALAAIAADVERAAEKVSLID
AGVPPIDYPESLPVSARREDIAEAIRDNQVVIIAGETGSGKTTQIPKICLDLGRGRRGLI
GHTQPRRLAARTVAERIAEEIGQEIGETVGYAIRFDDRVSSTSAVKLMTDGILLAEMQRD
SFLNKYDTLIIDEAHERSLNIDFLLGYLRRLLPKRPDLKVIITSATIDPERFAEHFAAAD
GTPAPIIEVSGRTFPVEIRYRPMEFERDGKVVDQDPLDALCEACEELMLEGPGDILCFFP
GERDIRDAMEAIEGRKWKGVEVTPLFGRLSNQEQHRVFQPHSGRRIVLSTNIAETSLTVP
GIRYVVDTGTARISRYSTRNKVQRLPIEPVSQASANQRSGRCGRVADGIAIRLYSEEDFA
SRPEFTDPEILRTNLASVILQMTMMRLGDIAEFPFVQKPENRAIRDGLLLLHELGALTDE
ERNGEPVLTQTGRDIARLPVDPRMARMLVEANRLGELDAVLVIVSAMTIQDVRERPMEQQ
AQADQKHARFKDANSDFLSFLKLWDYINQSRDDLTGNAFRRRMKDEYLHYMRIREWYDLV
RQLREVTRQLGWSARHDVAGDRSPDAIHQSLLAGLLSHIGSRDGNSREFKGARGTRFMIF
PGSSLAKKPPEFLMAGELVETSRLWARDVAKIEPAWVEKLAGPLLRHQHSEPSWSRKRAS
GIAHEKSTLYGVTIVADRVVPYHRVDPEAARDMFIRHALIEGDWTTHHTFFHSNVEKLEA
AAEIEEKARRRGIIVDEDTLFDFYDSRLPATITTGRHFDTWWKKERQANPELLDFDPDSL
LGADAGEITEEAFPDKWRKGSIDYDLEYRFEPGHPQDGVTILVPIPLLAGMDREGFDWLV
PGLREELLTELIRTLPKELRKTVVPAPDYAARALPRLIPYEGPLVEQFAGVLRSLGGRQI
TAEDFRSAALPAHLKMTFGAVDRRGKVVDADKDLGALIQRNAGSIRSSVSKASRTSEAKA
VPKWTPENLGTVAEEVQTVVDGHEVTAYPALVAAPGGVEIRVYPTKAAAEASMMTATLTL
LLREISVNANQMTKGLPLQQRVAVDNYPHGGAAGLVEDARVAAIRDLMIQHGGPVRSPEQ
FEELKKTVAPEVAGAVRRTVVTIAPALIEYQSVAEELSRWSGAAIDDMKAQLEFLLPRNA
ITLHGAAQLRHLPRYLQAVRIRLDEMAQDPGKDADRQDEVEEAQSYLALRLARLPKGREK
TREAKDIRWMIEELRVSLFAQRLGTARPISLRRIQKAVDKLR
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgagtacctcttctgatgccccggtcacccgcgacgccctcttcgagcgcctcgcgcac
gtctcgctcaccgacgaacgctccatccgccgccgcctgcacaaggcccgcaccccgcag
gcgttggcggcgatcgccgcggacgtggaacgggccgccgagaaggtgtcgttgatcgac
gccggcgtccccccgatcgattacccggaatcgctgccggtctcggcccggcgcgaggac
atcgcggaggcgatcagggacaaccaggtcgtcatcatcgccggcgagacgggttcgggc
aagaccactcagatccccaaaatctgcctggacctgggccgtggccgccgcggactgatc
ggccacacccagccgcgccgtctggccgcgcgcaccgtcgccgagcgcatcgccgaggag
atcgggcaggagatcggcgagaccgtcggctacgcgatccgtttcgacgaccgcgtctcc
tccacctccgccgtcaagctcatgaccgacggcatcctcctcgcggagatgcagcgcgac
agcttcctcaacaagtacgacacgctcatcatcgacgaggcccacgagcgctccctcaac
atcgacttcctgctgggttacctgcgccgcctgctgcccaagcgcccggacctgaaggtg
atcatcacctccgcgacgatcgacccggagcgcttcgcggagcatttcgccgccgccgac
ggcacaccagcccccatcatcgaagtctcggggcgcacttttcccgtggagatccgctac
cggccgatggagttcgaacgcgacggcaaggtcgtcgaccaggatcccctcgacgcgctg
tgcgaggcctgcgaggaactcatgctcgagggacccggcgacatcctgtgcttcttcccc
ggcgagcgcgacatccgcgacgccatggaggccatcgagggcaggaagtggaagggcgtg
gaggtcacgccgctgttcggccgcctgtccaaccaggagcagcaccgggtgttccagccg
cactccggccggcgcatcgtcctgtccaccaacatcgcggaaacctccctgacggtcccc
ggcatccgctacgtcgtggacaccggcacagcccgcatctcgcgctactccacgcgcaac
aaggtccagcggctgcccatcgagccggtctcgcaggccagcgccaaccagcgctccggg
cgctgcggccgcgtggccgacggcatcgccatccgcctctactctgaggaggacttcgcc
tcccggcccgagttcaccgacccggagatcctgcgcaccaacctcgccagcgtcatcctg
cagatgacgatgatgcgcctcggcgacatcgccgagttccctttcgtccagaaacccgag
aaccgcgccatccgcgacggcctgctgctcctgcacgaactcggcgcgttgacggacgag
gaacgcaacggcgagccggtgctcacccagaccggccgcgacatcgcgcgcctgcccgtc
gacccccgtatggcccgcatgctcgtggaggccaaccgcctcggcgaactcgacgcggtc
ctggtcatcgtctccgccatgaccatccaggacgtccgtgaacgccccatggagcagcag
gcccaggccgaccagaagcacgcccgtttcaaggacgcgaacagcgatttcctcagcttc
ctcaagctgtgggactacatcaaccagtcccgggacgacctcaccggcaacgccttccgg
cgccgaatgaaggacgagtacctccactacatgcgtatccgcgagtggtacgacctcgtc
cgccagctgcgcgaggtcacccgccagctcggctggtccgcgcgccacgacgtcgccggc
gaccgcagccccgacgcgatccaccagtccctgctcgccggcctgctctcccacatcggc
tcccgcgacggaaacagccgggagttcaagggcgcccgcggcacccgattcatgatcttc
cccggctcctccctggccaagaagccgccggagttcctcatggccggcgagctcgtggag
acctcccggctgtgggcacgcgacgtcgcgaagatcgaacccgcctgggtggagaagctc
gccggtccgctactgcggcaccagcactccgaacccagctggtcccgcaagcgggcctcc
ggcatcgcccacgaaaagtccaccctctacggcgtcaccatcgtcgccgaccgggtggtc
ccctaccaccgtgtcgatcccgaggccgcccgggacatgttcatccggcacgccctcatc
gagggcgactggaccacccaccacaccttcttccattccaatgtggagaagctcgaggcc
gccgccgagatcgaggagaaggcccgccgccgcggcatcatcgtcgacgaggacaccctc
ttcgacttctacgactcccgcctccccgccaccatcacgaccggccggcacttcgacacc
tggtggaagaaggagcggcaggccaacccggagctcctcgacttcgaccccgattccctc
ctgggcgccgacgccggagagatcaccgaggaagccttccccgacaagtggcgcaaaggc
agcatcgactacgacctggagtaccgcttcgagcccggccacccgcaggacggcgtgacc
atcctcgtccccattcccctgctggcgggaatggaccgcgaaggattcgactggctggtg
ccggggctccgcgaggaactgctcaccgagctgatccgcaccctgcccaaggaattgcgc
aaaaccgtcgtgcccgccccggattacgctgcgcgggccctgccccggctcatcccctac
gaggggccgttggtcgagcagttcgccggagtgctgcgttctctcggcgggcggcagatc
acggccgaggatttccggtccgccgccctgcccgcacacctgaagatgaccttcggggca
gtcgaccggcgcggcaaggtcgtcgacgctgacaaggacctcggcgcgctcatccagcgc
aacgccggctcgatcaggtcatccgtgagcaaggcctcgcgcaccagcgaggccaaggcc
gtacccaagtggactcccgagaatctgggcaccgtcgccgaggaggtgcagacggtggtc
gacggccacgaggtcaccgcctaccccgcgctcgtagccgcccccggcggcgtggagatc
cgcgtgtacccgaccaaggccgccgcggaggcctccatgatgaccgcgacgctgaccctg
ctgctgcgcgagatctccgtcaacgccaaccagatgaccaaggggctgcccctgcagcag
cgcgtggcggtggacaactacccccacggcggtgcggccggtttggtcgaggacgcgcgt
gtcgccgctatccgcgacctcatgatccagcacggcggaccggtgcgctccccggagcag
ttcgaggagctgaagaagacggtggctcccgaggtggcgggcgccgtccggcgcaccgtg
gtcactatcgcgccggcgctcatcgagtaccagtccgtcgccgaagaattgtcccgctgg
agcggcgccgccatcgacgacatgaaggctcagctggaatttctcctgccgaggaacgcc
atcactctgcacggcgccgcccagctgcgtcacctcccccgctacctgcaggccgtgcgc
atccgtctcgacgagatggcgcaggacccaggcaaggacgccgaccggcaggacgaggtc
gaggaggcgcagtcttacctcgcgctgcggctggcccggctgcccaagggcagggagaag
acgcgcgaggccaaggacatccggtggatgatcgaggagctgcgggtcagtctgttcgcc
cagcgtctgggaactgcgcggcccatctcgttacgccggatccagaaggccgtggacaaa
ctgcgctga
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