Corynebacterium marinum: B840_09520
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Entry
B840_09520 CDS
T03633
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cmq
Corynebacterium marinum
Pathway
cmq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B840_09520 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmq03019
]
B840_09520 (rne)
03009 Ribosome biogenesis [BR:
cmq03009
]
B840_09520 (rne)
Enzymes [BR:
cmq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B840_09520 (rne)
Messenger RNA biogenesis [BR:
cmq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B840_09520 (rne)
Ribosome biogenesis [BR:
cmq03009
]
Prokaryotic type
rRNA processing factors
B840_09520 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AJK69495
UniProt:
A0A0B6TV68
LinkDB
All DBs
Position
complement(1979781..1983092)
Genome browser
AA seq
1103 aa
AA seq
DB search
MAESTEPTDRNTAEDMGNEAPKKRRSTRKTTRRATAKAAAPEAGQPTEQPTGQDETKARE
DKVRVHVLAKSLGRTSKELVEAAAGLGLKKVAQSTLTPEEARRVVEALTPEQPQPEPAAA
EEPRDEDTIRTRVRKNVANEISQIEERVDADLAELIQEQPEDEPVEEIAPVITPIPAEES
VVEQFVPLFRAPGTAPAAAEDEDEDEESAASRRRRRGRRGAGRGRGSEEQQEEVEVEQEG
VDKQDSPQEHEEDYLDHEEDEDLPEEPVALKGSTRLESQRRRRAEMREEGRRKKHIVSQA
EFLARRESVARTMIVRERPRHDHPGLVTQVGVLEDDLLVEHFVTSEAQASMIGNIYLGRV
QNVLPSMEAAFIDIGKGRNGVLYAGEVDWKSAGLGGRSRRIEQALKSGDQVLVQVSKDPL
GHKGARLTTQISLAGRYLVYVPGGRSAGISRKLPGPERRRLKEILGRVVPGQGGAIIRTA
AENVPEEAIAADVDRLHRLWEDIQERSDKEMHTRGSKPVTMYEEPDMLVKVVRDLFNEDF
TALVVDGERAWNTVHAYVKSVAPDLLDRVQRFNRDENDGQDAFAQYRVDEQLQKALNRKV
WLPSGGSLVIDRTEAMVVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGM
IVVDFIDMVLPENQELVLRRLKEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFST
ECEHCGGRGLILHEDPVEEPVEFEERPRRSQAKAAHDPGRHPAAVAIKREDESSDIEELA
AAVVVTSDEDEQAEKAPEKTPEKESSSQRNRSRRGRRGTSRGRAADATEAAEAAAAAVPG
ASEASATRQAPAAPAAPAAPAAPAVDDIEAIVAAAVERAAEIDPDEPSGADYVSDEVSGK
GSGEGSGEKTFQQAIAEFEASPRRRRRTRGNSRSDRRPKPEDFPGSAATGPVAKAEETMI
KVREVEEDKKVEAPADAGRPSARTRGRRRAGRSFRVEETPQAQEAQQQAKAPVAPETATV
AEEKPRRNRPSELSSGAPAATRGRRRAVRRTMSAADEADRVPEQAREQAREQKPEKERSV
PEGGVERRSSRGRRRVTRRTTGR
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaatccaccgaacccaccgaccgtaacaccgcagaagacatggggaacgaggcg
ccgaagaagcgccggtcgacacgcaagaccacccgcagggccaccgcgaaggccgccgcc
ccggaggcggggcagcccaccgagcagcccaccgggcaggacgagaccaaggctcgcgag
gacaaggtgcgcgtgcacgtcctggcgaaatcgctgggcaggacctcgaaggagctcgtc
gaggcggccgccggcctggggctgaagaaggtcgcgcagtcgacgctcaccccggaagag
gcccggcgggtcgtcgaggcgctcacgcccgagcagccccagccggaacccgcggcggcg
gaggagccccgcgacgaagacacgatccgcacccgggtgcgcaagaacgtggccaacgag
atctcccagatcgaggagcgggtcgatgccgacctcgcggaactcatccaggagcagccg
gaggacgagccggtcgaggagatcgccccggtgatcaccccgatcccggcggaggagtcc
gtcgtcgagcagttcgtgcccctgttccgcgcccccggtaccgcgcccgccgcggcggag
gacgaggacgaggacgaggaatcggctgcttctcgacgccgccgccggggccgccgcggc
gccggccgcggccgcgggagcgaagaacagcaggaagaggtcgaggtcgagcaggagggc
gtcgataagcaggacagcccgcaggagcacgaggaagactacctggaccacgaggaagac
gaggacctcccggaggagcccgtcgcgctcaagggctcgacccggctggagtcgcagcgc
cgtcgccgcgcggagatgcgtgaggagggccgccggaagaagcacatcgtctcccaggcg
gagttcctggcgcgccgggagtccgtggcgcgcaccatgatcgtgcgggagcggccccgg
cacgaccaccccggcctggtgacccaggtcggcgtgctcgaggacgacctgctggtcgag
cacttcgtgaccagcgaggcgcaggcctcgatgatcggcaacatctacctcggccgggtc
cagaacgtcctgccgagcatggaggcggcgttcatcgacatcggcaaggggcgcaacggc
gtcctctacgccggtgaggtcgactggaagtcggccggactgggcgggcgcagccgccgc
atcgagcaggccctcaagtcgggcgaccaggtgctggtgcaggtgagcaaggacccgttg
gggcacaagggtgcccgcctgaccacgcagatctccctcgccggccgctacctcgtgtac
gtgcccggcggacgcagcgccggaatctcccggaagctgcccgggcccgagcgtcgacgc
ctcaaggagatcctcggccgcgtggtaccgggccagggcggcgcgatcatccgcaccgcc
gccgagaatgtgccggaggaggccatcgccgcggacgtggaccgtctccaccgtctgtgg
gaggacatccaggagcgctccgacaaggagatgcacacccgcggctccaagcccgtcacc
atgtacgaagagcccgacatgctggtcaaggtggtccgcgacctgttcaacgaggacttc
accgcgctcgtcgtcgacggtgagcgggcctggaacaccgtccacgcctacgtcaagtcc
gtcgccccggatctgctggaccgcgtccagcgcttcaaccgcgacgagaacgacggccag
gacgccttcgcccagtaccgcgtggacgagcagctgcagaaggcgctcaaccgcaaggtg
tggctaccctccggcggctcgctggtcatcgaccgcaccgaggcgatggtcgtcgtcgac
gtcaacaccggcaagttcaccggctccggcggcaacctcgaggagaccgtcacccgcaac
aacctggaggcggccgaggagatcgtccgccagatgcgcctgcgcgacctgggcggcatg
atcgtcgtcgacttcatcgacatggtcctgcccgagaaccaggagctggtgctccggcgc
ctcaaggaggccctcggccgcgaccgcacccgccaccaggtctccgaggtcacctccctc
ggcctggtgcagatgacccgcaagcgcctgggcaccggcctgctggagaccttctccacc
gaatgcgagcactgcggcggccgcggcctgatcctgcacgaggatccggtcgaggagccc
gtcgagttcgaggagcggccgcgccgctcccaggcgaaggccgcgcacgatcccggccgc
cacccggcggccgtggccatcaagcgtgaggatgagtcctccgacatcgaggaactcgcc
gccgccgtggtggtcacctccgatgaggatgagcaggcggagaaggccccggagaagact
ccggagaaggagtcctcctcccagcgcaaccgctcccgtcgtggccgacgcggaaccagc
cgcggccgggccgctgacgccacggaggctgctgaagctgcggctgccgcagtgcccggg
gcgtctgaggcgtctgcgaccaggcaggctcccgctgcccccgctgccccggctgccccg
gctgctccggcggtcgacgacatcgaggcgatcgtcgccgccgccgtcgagcgcgcggcc
gagattgatccggacgaaccctccggcgcggactacgtctccgacgaggtctccgggaag
ggctccggagagggctcgggcgagaagaccttccagcaggcgatcgccgagttcgaggct
tcaccgcgccgccgtcgccgcacccgcgggaactcccgctcggaccgtcgtccgaagccg
gaggactttccgggttccgccgccaccggccccgtggccaaggcggaggagaccatgatc
aaggtccgcgaagtcgaggaggataagaaggtggaggctccggcagacgccgggcgtccg
tccgcccgaacccgcggacgccgtcgtgcgggccgcagcttccgggttgaggagaccccg
caggcacaggaggcacagcagcaggcgaaggcgcccgtcgcgcccgagaccgccaccgtc
gcggaggagaagccgcggcgcaaccgcccctcggagctctcctccggggcgccggccgct
acccgcgggcgtcgccgcgcggtgcgccgcaccatgtcggccgccgacgaagctgaccgg
gtccctgaacaggcccgtgagcaggcccgcgagcagaagccggagaaggagcggagcgtg
ccggaaggcggcgtcgagaggcggagctcgcgaggccgtcgacgcgtcacgcggcgcaca
accggtcgctag
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