Cyclobacterium marinum: Cycma_0330
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Entry
Cycma_0330 CDS
T01592
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
cmr
Cyclobacterium marinum
Pathway
cmr03030
DNA replication
cmr03430
Mismatch repair
cmr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cycma_0330
03430 Mismatch repair
Cycma_0330
03440 Homologous recombination
Cycma_0330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmr03032
]
Cycma_0330
03400 DNA repair and recombination proteins [BR:
cmr03400
]
Cycma_0330
Enzymes [BR:
cmr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Cycma_0330
DNA replication proteins [BR:
cmr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Cycma_0330
DNA repair and recombination proteins [BR:
cmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Cycma_0330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
ExoX-like_C
RNase_H_2
HH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
AEL24110
UniProt:
G0IUB5
LinkDB
All DBs
Position
352258..353061
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AA seq
267 aa
AA seq
DB search
MDLNIKTPIAFFDLEATGINISTDRIVEISILKIFPDSSQELKTLKINPTVPIPIETSLI
HGIYDKDVEDAPTFKDVAKELFRFFEGADLAGFNVLKYDIPLLVEEFLRVGIDFDIEKRN
LLDAQKIFFMMEKRNLSSAYKFYCGKTLENAHSAEADTIATYEVFKSQIERYQGQELEDL
QGNKIGIIENDMKKIHNMINEKMVDLAGRFVFNDNGEECFNFGKQKGKPIAQVLKEEPGY
YDWMMKGDFPLDTKRKLTQVKLRGFNL
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atggatttgaacatcaaaacgcccattgcattttttgaccttgaggccacaggaattaat
atctctactgatagaattgttgaaatttcaatactaaaaatttttcctgattcaagccaa
gaactaaaaacgctaaaaattaaccccaccgttcctatccctatagaaacctcattaatt
catggcatatatgataaggatgtggaagatgcacctacttttaaagacgtggcaaaggaa
ttgtttcgtttttttgaaggcgctgatttggcaggtttcaatgtcctcaagtacgatatc
cccctattggttgaagaattccttagggtaggaatagattttgacattgaaaaaagaaat
ttacttgatgcccaaaagatcttttttatgatggaaaaaagaaatttatcttccgcctat
aaattttattgtggcaaaaccttggaaaatgcccacagtgctgaagcagacaccatcgct
acttatgaggtttttaagtcccaaatagaaaggtatcagggtcaagaacttgaagacctt
caaggtaataaaattggaataattgaaaatgatatgaagaaaattcataacatgatcaat
gagaaaatggtggatcttgcaggaaggttcgtgtttaacgataatggagaagagtgtttc
aatttcggcaaacaaaaaggtaagcccattgcccaagtacttaaagaagagccgggatac
tatgattggatgatgaaaggggatttccctcttgacaccaaaagaaaactgacacaagta
aaattgagaggttttaatttgtaa
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