Cyclobacterium marinum: Cycma_0400
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Entry
Cycma_0400 CDS
T01592
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cmr
Cyclobacterium marinum
Pathway
cmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cycma_0400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmr03019
]
Cycma_0400
03400 DNA repair and recombination proteins [BR:
cmr03400
]
Cycma_0400
Enzymes [BR:
cmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cycma_0400
Messenger RNA biogenesis [BR:
cmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cycma_0400
DNA repair and recombination proteins [BR:
cmr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cycma_0400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
UvrD_C
AAA_19
Helicase_C
Viral_helicase1
UvrD_C_2
AAA_30
ResIII
AAA_22
SLFN-g3_helicase
AAA_16
PhoH
AAA_12
FtsK_SpoIIIE
AAA_11
Phage_phiJL001_Gp84_N
Motif
Other DBs
NCBI-ProteinID:
AEL24179
UniProt:
G0IVI3
LinkDB
All DBs
Position
439868..444724
Genome browser
AA seq
1618 aa
AA seq
DB search
MKLIAFIDTETAVKSQKVLDIGSIKSTGEIFHSPSMNAFMEFLKGTQFICGHNIIKHDLK
YIGRGLTDINFDTSKIIDTLFLSPLLFPKRPYHALVKDDKLQTEDKNNPLNDAKKAKDLF
FDEISAFQQLSKSLQEIYYMLLGEKPEFKAFFTFLDYQSHSTEIESFIRKEFYNDICQEA
NLSKLIEYSPTALAYSLALINTRSRLSITPPWVIKNYPDIESILYQLKNNPCLPGCQYCN
QALDIHRGLKKFFGFETYRTYGEEPLQEKAVKAAIDNKSILAVFPTGGGKSITFQVPALM
SGENAKGLTVVISPLQSLMKDQVDNLEKSGITDAVTINGLLDPIERAKSFERVENGAASI
LYISPESLRSKSIEYLLLGRNIIRFVIDEAHCFSSWGQDFRVDYLYIGDFIHALQKKKNK
AEPIPVSCFTATAKQKVIEDICRYFQEKLSLELQIFRSKTSRTNLHYKVFPKEDEEQKYN
AVRSLIEEKDCPTIIYVSRTYKAYVLAEHLTNDGFSAKPYHGKMDKQEKSENQDAFINGS
VQVMVATSAFGMGVDKKDVGMVIHYEISDSLENYVQEAGRAGRDENISADCFVLFNEEDL
SKHFILLNQTKLSIKEIQQVWRAIKNITRFRSTVSNSALEIARKAGWYDNIREIETRVKT
AITALEEAGYIKRGQNIPKIYANSILAQNAQEAIDKINASEKFQDNQKQNGIRIIKKLFS
SKSKNHSNEEEAESRIDYISDHLGIVKEEVFKIIRLLREENILADSKDLTAFIKNGENKN
RPLAIVEAYAHIENFLLSTFGEDEKTFQIKALNEAAEENGCKEVSLNKIKTIINFWAIKN
WIKRKALSYSNSHINIFCIQPKDKLSEKLKKRHELAVFIINFLHSRYLSNVPEVEQSKTQ
LLIEFSVQELKEAYENSSLLFKVPITAEDIEDTLFYLSRIEALKIEGGFMVVYNQLTIER
IEQDNKIRYKVDDYQKLNEFYENKVQQIHIVGEYAKRMLNDYKEALQFAEDYFQLNYNVF
LNKYFKGSRQNEIKRNITPSKFRQLFGELSPRQLKIIKDNQSNNIVVAAGPGSGKTRVLV
HKLASLLLMEDVKHEQLLMVTFSRAAASEFKQRLLKLIGNAANFIEIKTFHSYCFDLQGK
IGDLDKSTDIIKKTVEKITGGEVEANRITKTVLVIDEAQDMDANEFALIKALMEQNEEMR
VIAVGDDDQNIFEFRGANAKYLEQFIHKKQAVKYELTENYRSQKNLVDFTNQFIKRLPNR
LKTNPINAISDKNGKIKLVKYQGQHLISPIVNDILSSELKGSTCVLTRSNDEALQITGLL
LKYKIPAKLIQTNDGFNLFNLIELRFFFNHLELADDVYVIDEQLWRHAKKALWQKYKKSS
KIEVCINLIKEFEASHPNRKYKSDLELFLKESKLEDFISRNGDAIWVSTIHKAKGKEFDN
IFLLLQNLSRLLDEDIRLLYVAMTRAKQQLSIHLKGDFLDNIIVDDLVKVTDSTHWPEPD
IMVMQLSYKDVWLSFFKYTQYRTSHLKSGDELQAKEGTCFDQENHPILKFSKKFKMQLED
LEKGAYHLASVKVNFIVYWKAEETEEELLIVLPELHFKKKTNPIESIIQAASTPTTTK
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaatagctttcatcgatacagaaacagctgtcaaatcccagaaggtgcttgac
ataggaagtataaaaagtacaggagagatttttcattcaccttccatgaacgccttcatg
gaatttttaaaaggaactcagtttatctgtgggcataatatcatcaagcatgatctaaaa
tacattggcagaggactaactgatatcaattttgacacttcaaaaatcattgacaccctg
ttcctttcccctttactttttcccaaaagaccttatcatgcactcgttaaggacgataaa
cttcaaacagaagataaaaataatcccttgaatgatgccaaaaaggccaaagatcttttt
tttgatgaaatctcagcttttcaacaactaagcaaatccctacaggaaatttattatatg
ttgcttggggaaaaaccggagtttaaagcctttttcacttttctagattaccaaagccac
agcactgaaattgaaagtttcataaggaaagaattctacaatgacatttgtcaagaggct
aatttgtcaaaacttattgaatactcacctaccgcacttgcttatagcttggctttaatc
aataccagaagccgactatccatcaccccaccctgggtaataaaaaattacccggacatt
gaaagtattttgtaccaattgaaaaacaacccttgtttacccggatgccaatattgcaat
caggcattagacatccacagggggttaaaaaagttttttggctttgagacatacagaacc
tatggagaagagcccctgcaagagaaagctgttaaagctgcaattgacaataaatcaatc
ttagctgtatttcctaccggagggggcaaatccatcacctttcaggtacctgctttgatg
tcaggagaaaatgcaaagggtttgaccgtggtgatttccccgctacagtctttaatgaaa
gatcaggtagataatttggagaagagcgggattactgatgccgtaactatcaatggtctt
ttagacccaattgaaagagcaaaatcttttgaaagggtagaaaatggagcagcttctatt
ctttatatctctccggaatccctgcggtcaaaatccattgaataccttttgctgggtaga
aatatcatccgatttgtaatcgacgaagcccattgtttttcttcttggggacaagacttt
agggttgactatctatatatcggagattttatccatgccttacaaaagaaaaaaaacaag
gccgaacccatacctgtttcctgtttcactgccaccgccaaacaaaaagtcattgaggat
atttgtcgttacttccaagaaaaactttccttggaactgcagatattcaggtcaaaaact
tccaggaccaatttacattataaggttttccctaaagaagacgaagaacaaaaatacaat
gcggtcagaagtttaattgaagaaaaagattgccctacaattatatatgtttcaaggacc
tacaaggcctatgtactggctgagcacttaaccaatgatggttttagcgcaaagccatac
catggaaagatggacaaacaggaaaagtctgaaaatcaagatgcatttatcaatggatcg
gttcaagtaatggtggccacctctgcatttggcatgggagtagacaagaaagatgtagga
atggtgatccattatgaaatttcagactcacttgaaaattatgtacaagaagccggcagg
gcaggaagggatgaaaatatctcagcagattgctttgtattattcaatgaagaggatctc
agcaaacattttattttactcaatcaaaccaagttaagtataaaagaaatccaacaggtt
tggagggccatcaaaaatatcacccgctttaggtcaacggtatccaattctgccttggaa
attgccagaaaagccggttggtatgacaatattagggaaatagaaactagagtaaaaaca
gctataacagcactggaggaggccggttatatcaaaagggggcaaaatataccaaaaata
tacgccaatagtattctcgctcaaaatgcccaagaggccatcgataaaattaatgcttct
gaaaaatttcaggacaatcaaaaacaaaacggtattcgaataatcaaaaagcttttttcg
agcaaaagcaaaaatcactcaaatgaggaagaagcagaatcccgcatagattatatttct
gaccatctaggaattgttaaagaggaggtctttaagattatccgcctgttgcgtgaagaa
aatatcttggcagactccaaagatttaactgcctttataaaaaatggagagaacaaaaac
cgcccactcgcaatagtagaagcttatgcccacattgaaaatttccttctttctaccttt
ggagaagacgagaagacctttcaaattaaagccttgaatgaagctgcagaagaaaatggc
tgtaaagaagttagcctcaataaaatcaaaaccatcatcaacttctgggcaattaaaaat
tggatcaaacgaaaagcacttagttattccaattctcacatcaatatattttgcattcag
ccaaaggataaattaagtgaaaagttaaaaaaacgacatgaacttgccgtctttatcatc
aattttctgcattcaaggtacctatctaacgttcctgaggtagagcaaagcaaaacacag
ctcctaatcgagttttccgtgcaggagttaaaagaagcctacgaaaattcatccctactt
tttaaggttcctatcactgctgaggacatcgaagataccctcttttacttatcgagaatt
gaagctttaaaaatagaagggggatttatggtggtttacaatcaattaaccattgagaga
attgaacaggacaataaaatccggtacaaggtcgatgactaccagaagttgaatgaattc
tatgaaaacaaggtacagcagattcatatcgtaggagaatatgccaaaagaatgttaaat
gattataaggaagccttgcagtttgctgaagattatttccaattgaattacaacgtattt
ttaaacaaatactttaaaggaagccgacaaaatgaaatcaaaaggaacatcaccccgagt
aaattccggcaacttttcggtgaactttccccccgtcaattaaaaataatcaaagacaat
caatccaataatatcgtggtagctgcaggacccggcagtggaaaaaccagggttttggtt
cataaactggcttctttgttgctaatggaggatgtaaaacatgagcaattgctaatggtt
actttttctagggccgcagcctcagaattcaagcaaagacttcttaagcttattggcaat
gcggccaattttatcgagataaaaacctttcattcctattgctttgacttgcagggaaaa
attggagacttagacaaatcgaccgatatcatcaaaaaaacagtagagaaaattaccggg
ggagaagtggaagccaaccgaattaccaagacagttttggtgatagatgaagcccaagat
atggatgccaatgaatttgctttaatcaaggccttgatggagcaaaatgaagaaatgaga
gtgattgctgtgggagatgatgaccaaaatatattcgaatttcgaggcgccaatgctaag
tacctggaacaatttatccataaaaaacaggccgttaaatacgaattgacagaaaactac
aggagccaaaagaatctggttgatttcaccaatcaatttatcaaaaggcttccaaaccgt
ttaaaaaccaatccaataaatgcaatatccgacaaaaatggaaaaattaaacttgtaaaa
tatcagggccaacatctcatttcacctatagtaaatgacatcctaagttcggagcttaaa
ggaagtacttgtgtattgacccgatccaatgatgaagcattgcaaatcaccggtttattg
ctcaaatacaaaattcccgctaaattaattcaaacaaatgatggctttaatttattcaat
cttatagagcttcgctttttctttaatcatttggaattagctgatgatgtatatgtaatt
gatgaacaactgtggagacatgccaaaaaagctttgtggcagaaatacaaaaagagctcg
aaaattgaagtatgcatcaacttgattaaggaatttgaagcttcccatcctaatagaaag
tacaagtctgatctggagcttttcctcaaagagtctaagttagaagattttatttcccgc
aatggagacgctatctgggtttcgaccatacataaagccaaaggtaaggagtttgacaac
atctttctgcttttacaaaacctcagccgactactagacgaggacatcaggcttttgtat
gtagccatgacaagggccaaacagcagctgtccattcatttaaaaggggattttctggac
aatattattgttgacgacctggtcaaagtgactgactccacccattggcctgaaccggac
attatggtgatgcaactcagctataaagatgtctggctaagtttttttaaatatacccaa
tacaggacttcccatttaaaaagtggcgatgaactccaggcaaaggaaggcacttgcttc
gatcaggaaaaccatcccatcttaaaattctcgaaaaaattcaaaatgcaacttgaggat
ctggaaaaaggagcttaccatcttgcctctgttaaagtaaactttatcgtttattggaaa
gcggaggaaactgaggaagaattattaatcgtcttgcctgaattgcatttcaaaaaaaag
accaatccgattgaaagtatcatacaagcagccagtacccccaccaccactaaatag
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integrated database retrieval system
