Cyclobacterium marinum: Cycma_1028
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Entry
Cycma_1028 CDS
T01592
Name
(GenBank) SMC domain protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
cmr
Cyclobacterium marinum
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmr03400
]
Cycma_1028
DNA repair and recombination proteins [BR:
cmr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Cycma_1028
Archaeal homologous recombinant proteins
Cycma_1028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_21
AAA_29
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AEL24800
UniProt:
G0IVN3
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All DBs
Position
1209133..1212171
Genome browser
AA seq
1012 aa
AA seq
DB search
MIPLKLSVQGLYSYKEEQTIDFEKLTAAGIFGIFGAVGSGKSSILEAILLALYGSTERLS
DRGEKNSMVNLQSQQLLINFEFKAGKNNSQIYLARYAVKRNSKRFDEIRPAEHTFYLKEG
DVTTPLNQNAEAIIGMKKEHFKQTVIIPQGKFREFIDLTPGPRAEMMKELFGLARFDLSA
KTGSLLKVVRGELIRLETQLEGLGDISAELLKEKEKAQQELAKTVNAATESLEKTNLQFQ
SLQTQKQKHNQLLAYQKQWEGLQSRTKEIETKKKELKAFIQANSYLKPVWNQIRDEQLEL
EKASVGFADCNRFKETYIEQIAKLEQQEGELRKKVDKRPEREAKIRDLEKVIAIQIIQRK
LDAAQKKVSQIKPAIEEGLGQQKALENQLELLEKELEESRNQPNSTLMARLTGDLKDWKS
LSLSIKKLEEAIAKLKLENDSIQKEENKILGMIPSQFTSLELWDAWEKENIKSIEADKAK
YIKKKALQAHIHSLKEGEPCPLCGAVEHPSPLTSDHTEEKVNGYNQQIEETRQNLEKIQL
LSRRLYDQELQKTNQTKLISDKTGELQDLNHQFNTLKNELSTLGIHTLEDINERLSVLTD
QIKKEDQLHNSAREYRKKIDILRTRIDGAHQELRKEEQQAIAHASTLQAKEDEISDKAFC
EKYMDSSTETIQQMIASVRKDIEDTANLLDGKQKVLKEKRQDAATNLANLENFSKSKEEA
SIKLEKLKNEFDALKTQYGQTDQAQLEKLFNSKLDEDKLDQEIREYEQDCSVVQSHLATL
EAEEGIKTFDQNYFDEVAENHAKKKEELEQVQKEKINIDRDVSDIREKLETKKGLLKILD
TMENRASNLKELEQLFKGSGFVKYVSSIYLKELCNTANKRFTQLTKNSLRLEIDDNNTFW
VIDYLNDGRKRLLKTLSGGQTFQASLCLALALAEKVKSINQADQSFFFLDEGFGALDRNS
LRIVFETLKALRHENRIVGIISHVEELQQEIGVFATIELDPEKGSQVKYSYQ
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgattcctttaaagctttccgttcaaggcctttactcctacaaggaagaacaaaccata
gattttgaaaaacttactgcagcgggaatttttggcattttcggggccgttggcagtgga
aaatcctccattttggaggccatacttttggccctgtatggcagcactgagaggctgtct
gacaggggggagaaaaacagcatggtcaacctgcaaagccaacaattacttatcaatttc
gaatttaaggccgggaaaaacaacagtcagatttacttggcaaggtatgcagtcaagcgg
aacagtaaaaggtttgatgagataagacctgcagagcatactttttatcttaaggaaggt
gatgtaaccacgccactgaatcaaaatgcggaagccataataggcatgaaaaaggagcat
tttaagcaaaccgtgatcattccacaaggtaaattcagggaatttatagacctaaccccg
ggacctagagctgaaatgatgaaggagttgtttggcttggcacgctttgatctatcagcc
aaaaccggcagtcttttaaaagtggttaggggtgaattgatccggttggaaacacaattg
gaaggcttaggcgatatttctgcagagcttttaaaagaaaaggaaaaagcgcaacaagaa
ttagcaaaaactgtgaatgctgccacagaaagccttgaaaagaccaatttgcaattccaa
tccttacaaactcaaaagcaaaagcacaaccaactgctggcctatcaaaaacagtgggag
ggtcttcaaagtcgaacgaaagaaattgaaaccaagaaaaaggagttgaaagcctttata
caggccaacagctatttgaaaccggtttggaatcaaataagagatgagcagttagaacta
gaaaaagccagcgtaggatttgctgattgcaacaggtttaaggaaacttatattgaacaa
atcgcaaaactggaacaacaagaaggagaactgagaaaaaaagtcgataaacgccctgaa
cgtgaagccaaaatccgggacttggaaaaggttatagctattcaaatcatccaaagaaaa
ctagacgccgctcaaaaaaaagtttcccaaattaaacccgccatagaagaaggcttaggc
caacaaaaagccttagagaatcaacttgaattattggaaaaggagcttgaagaaagtaga
aaccagcccaatagtacactgatggcaagacttaccggcgacttaaaggattggaaaagc
ctctccttaagcatcaaaaaactggaagaggccattgccaaattaaaattagaaaatgat
tccattcagaaagaagaaaacaaaattctaggcatgattccttcccaatttacgagcttg
gaactttgggatgcttgggaaaaagaaaacatcaaatctatagaagcggataaagcaaag
tatattaaaaaaaaagctttacaggcccatatccacagtttaaaagaaggagaaccttgc
ccactctgtggggctgtagaacacccttccccccttacttcagatcacaccgaagagaag
gtaaacggctataatcaacaaattgaggaaactagacagaatctggaaaaaatccaactc
ctttcccggaggctttatgatcaggagcttcaaaagaccaatcaaactaaactaatatcc
gacaaaaccggagaactgcaggacttaaaccatcaattcaacaccctcaaaaatgagtta
agcactttaggtatacatactctggaagatatcaatgaaaggctctcagtccttacggat
caaattaaaaaagaagatcaacttcacaacagtgctcgggagtatagaaaaaaaatagac
attctgcggactcgaatagatggtgcccatcaagaactgagaaaggaagaacagcaggct
attgcccatgccagcaccttacaagcaaaggaagatgaaatcagtgacaaggctttctgt
gaaaaatacatggattcttctactgagaccatccagcaaatgatagccagtgttcgaaag
gacattgaagacacggccaatttattggatgggaaacaaaaagtactgaaggaaaagcgc
caagatgctgcaaccaatttggccaatctggagaatttcagcaaaagcaaagaggaagca
tctatcaaactggaaaagttaaaaaatgaattcgatgctttgaaaacccagtatggacaa
acagatcaggcacagttggaaaaactattcaacagcaagttggatgaagataagcttgat
caagaaatacgggaatatgagcaagactgttccgtagttcaatcccacttggcaactcta
gaagctgaagaaggcatcaaaacctttgaccagaattactttgacgaagttgcagaaaat
cacgcaaagaagaaagaggaattggagcaggttcaaaaagagaaaataaacatagaccga
gatgtttcagacattagggagaagcttgagacaaagaaaggtttactaaagatattggat
accatggaaaacagggcttccaacttaaaggaattggagcaattgtttaagggcagtggc
tttgtaaaatatgtcagcagcatataccttaaagaattgtgtaacacggccaataagcga
tttacacaattgacaaaaaacagcctaagactggaaattgatgacaacaatactttttgg
gtgatagattatttaaatgatggacgaaaaaggttactcaaaactttatccggaggccaa
acctttcaggcatccttatgtttagcgctggctttggcagaaaaggtaaaatcaatcaat
caagcggatcaaagttttttctttttggatgagggctttggagctttggacaggaattcc
ctaagaatagtttttgaaaccttgaaggccctaaggcatgaaaacagaattgtaggtata
ataagtcatgtagaagaattgcaacaagaaattggtgttttcgccactatagaattagac
cctgaaaaaggaagtcaagtaaaatacagctatcaataa
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