Cyclobacterium marinum: Cycma_1083
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Entry
Cycma_1083 CDS
T01592
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cmr
Cyclobacterium marinum
Pathway
cmr03410
Base excision repair
cmr03430
Mismatch repair
cmr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cycma_1083
03430 Mismatch repair
Cycma_1083
03440 Homologous recombination
Cycma_1083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmr03400
]
Cycma_1083
DNA repair and recombination proteins [BR:
cmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Cycma_1083
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Cycma_1083
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cycma_1083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AEL24855
UniProt:
G0IVT8
LinkDB
All DBs
Position
1273036..1274736
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AA seq
566 aa
AA seq
DB search
MDYRWKHKDKANSELVEHLSNEINVNPTLANVLVNRGIADFQQAKDFFRPDLDKLHDPYL
MKDMNVAVQRLHQAIEKNEKILVYGDYDVDGTTSVALFYGFIQSFYSNVAFYIPDRYKEG
YGISEKGVRFAAENNFSLVVSLDCGIKALDKIDLANELGVDFIICDHHTPGETLPRAIAV
LDPKRKDCSYPFKELSGCGVGFKLIQAFSQFTGRNQNNLYAFLDLLVISIASDIVPISGE
NRILAYFGLERLNNNPRPGIKALILKGKLEKDINITDIVFKIGPRINASGRLEHAKASVE
LLISKDLDEAVRRAELVEDVNAARKNFDENITREALEMIETRELEGEFKSTVLFKEDWHK
GVIGIVASRCIEKYYRPTIILTESNNKATGSARSVYDFNIYEAIEECSDLLEQFGGHKYA
AGLTLSVANVPAFQAKFESVVSNRVSEIHMKPILEIDDELILDQINYRFYNILKQMTPFG
PGNPEPVFCANQVFAENVRVLKDKHLRFDIIQDGQSTKPVCIGFGFADYFDLLNSKMRFN
IAFEIRENTFRNTSSLQLYVKDIKFD
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggactatagatggaaacataaagacaaggcaaattccgaattagtagaacacctaagc
aatgaaataaatgtaaacccaacacttgccaatgtgctggtaaaccgtggcattgctgat
tttcaacaagccaaggattttttcagacctgacttagataaattacatgacccctacctc
atgaaagacatgaatgtggccgttcaaaggttacatcaagcaattgagaaaaatgaaaaa
atactggtttatggggattacgatgtagatggaaccacttctgtggctcttttttatgga
tttattcaatcgttttattctaatgtagctttttatattccggacagatacaaggagggt
tatggtatttctgaaaaaggagttcgctttgctgccgaaaataatttcagcttggtggtc
tcgcttgactgtgggatcaaagctttagataaaattgatttggccaatgaactgggtgtg
gatttcattatttgtgatcaccacactcccggagaaaccctcccacgagctattgctgtt
ttagaccctaaaagaaaagactgctcctatccttttaaagaattaagtggctgcggagtt
ggctttaaactcattcaagccttctctcaatttacaggaagaaatcaaaataacctttac
gctttcctagacttgctggttatcagtattgcttctgatattgttcccatttccggagaa
aacagaatcctggcttactttgggcttgaaagattaaacaataaccccagaccgggaata
aaagcgcttattttaaaaggaaaattagaaaaagacataaacattacagacattgttttt
aaaattggcccaaggatcaatgcctcaggaaggctggaacatgccaaagcatcagtagaa
ctcctcatttctaaagatctcgacgaggctgttcgacgggcagaacttgttgaagacgtt
aatgccgcacgaaaaaattttgatgagaatatcactcgtgaggcattagaaatgattgaa
acaagggagttggaaggagaatttaaaagtacagttttatttaaagaagactggcacaaa
ggagtaatcggcatagtagcttcacgctgtattgaaaaatactatcgcccaaccatcatt
cttactgaatccaacaataaggcaacaggcagtgctcgatctgtatatgattttaatatt
tacgaagccatagaagagtgtagtgacttgttggaacaatttggagggcataaatatgct
gccggtctcactttatctgttgcaaatgtccctgcatttcaagcgaaatttgaatcggtg
gtaagcaatagggtatctgaaatccatatgaaaccgattttggagatagatgatgaatta
attttagatcaaatcaactataggttttataatatcctcaaacaaatgactccctttgga
ccggggaatccggaacccgttttttgtgccaatcaggtctttgctgaaaatgtacgtgtg
cttaaggacaaacatttacgttttgacattattcaagatggacagagcactaaacctgtt
tgcatcggatttggctttgccgattatttcgacttattaaatagcaaaatgcgattcaat
atagcgtttgaaatacgagaaaacacatttagaaataccagtagtttgcaactttacgtt
aaggatatcaaatttgattaa
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