Cyclobacterium marinum: Cycma_1162
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Entry
Cycma_1162 CDS
T01592
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cmr
Cyclobacterium marinum
Pathway
cmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cycma_1162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmr03019
]
Cycma_1162
03400 DNA repair and recombination proteins [BR:
cmr03400
]
Cycma_1162
Enzymes [BR:
cmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cycma_1162
Messenger RNA biogenesis [BR:
cmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cycma_1162
DNA repair and recombination proteins [BR:
cmr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cycma_1162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
HTH_40
RecQ_Zn_bind
ResIII
DUF6572
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AEL24934
UniProt:
G0IY30
LinkDB
All DBs
Position
complement(1363797..1365926)
Genome browser
AA seq
709 aa
AA seq
DB search
MQPIDVLKKFYGYDSFRGQQESVIRQVIEKKDCIALMPTGAGKSVCYQVPAMVLPGLTLV
ISPLIALMKDQVDALNEIGIPAAFLNSTMDISEQRYVSDQAMKGGIKLLYVAPERLFSGT
HPLVNALKEMNLSLVAVDEAHCVSQWGHDFRPEYLKLGALRKAFPDTPFLALTATADKQT
RKDISARLHLNKPEWFISSFDRPNITYRVTLRSDGFGKLVDFLQHRPNDAGIVYCLSRKS
VENTAAKLNANGFSALPYHAGLSKENRQENQEKFIKDEVKIIVATIAFGMGIDKSNVRFV
VHTNMPQNIESYYQETGRAGRDGLPGEALLFYSLGDSITLKRMIESADNEEYVRHMKAKM
DTMVAFCQTKSCRRKYLLGYFGEKYSQDCGNCDVCFQKNNKSDMTIFSQMLLSAVVRLGQ
QFGLGHVILVLRGSQSAKVTNAQKELSVYGIGKDRSDDFWKRLGFQLIAEGYLLQEDPQR
PILKLSDLAWEKLKRKEKFLLAMEEEVFNLREPSNKKDEALFERLKNVRKVLADQQNVPP
YIVFSDATLVEMSQRYPRSEKELIRIGGIGQLKLEKYGKTFLEEINAHIDEHDIKPGQSV
GAPKRKLKRAPSGSVQETFVLYQQGKTIFQIAQFRSLAKTTIEGHIVQLIEEDKIKKATF
LDEKSCEDIRGAAKKLDGQGLKKLKDHFGEKYSYFELKVALAGNDQEAN
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccaatagacgtactaaaaaaattttatggatatgattctttcagggggcagcag
gagtctgttattcgccaagtcatagaaaaaaaagattgtattgcattgatgcctaccgga
gcgggaaaatcggtttgctatcaagttcctgccatggttttgcccgggctcactttggta
atttccccacttattgccttgatgaaagaccaagtagatgcgctgaatgaaataggtatt
ccggctgcttttttaaattctactatggatatcagtgagcagaggtatgtttctgaccaa
gccatgaagggaggtataaaattactttatgtagctccggaacggttgttttccggtacc
caccccttggtgaatgcactaaaagagatgaacctttctttggtagctgtagatgaagct
cactgtgtatcccaatggggacatgattttaggcctgaatatttaaaattaggtgccttg
agaaaagcatttcccgatactccttttttggcgctgacagctacggcagataaacaaaca
cgtaaagatatttcggctaggttacaccttaacaaaccggagtggtttatctcttctttt
gatagacccaatataacatatagggttactttaagatctgatggttttggtaaattggta
gattttcttcagcacaggcccaatgatgcgggtatcgtctattgtctgtcgagaaaatct
gtagagaacaccgctgccaagcttaatgccaacgggttttctgcattgccctaccatgcc
ggtcttagcaaagaaaatagacaagaaaatcaagagaaatttattaaggatgaggtgaaa
attattgttgctacaatcgcctttggaatggggatcgacaagtccaatgtccgttttgtg
gtgcacaccaacatgcctcaaaatattgaaagctattatcaagaaaccgggcgagcgggt
agagatgggttacctggagaggccttgcttttttatagtttgggggatagtatcaccctg
aagagaatgatagaaagtgccgataatgaggagtatgtccggcacatgaaagcaaaaatg
gacaccatggttgcgttttgccaaacgaaatcctgtaggagaaagtatttgctaggatat
tttggtgaaaaatattctcaggattgtggcaattgtgatgtttgttttcaaaaaaataat
aagtcagatatgactattttttctcagatgctactttctgcagtggtccgtttggggcaa
cagtttgggttgggtcatgttattttggtattaagagggtctcaatctgctaaagtcacc
aacgctcaaaaagaattatccgtttatggaatcggtaaagatagaagcgatgatttctgg
aaaagattaggttttcagttaattgcagagggataccttttgcaagaagatcctcaaagg
cctattttaaagctcagtgacttggcttgggaaaaattgaagcgcaaggaaaaatttctc
ttggccatggaagaggaagtgtttaacctccgagagccaagcaataaaaaagatgaagct
ttgtttgaaagactaaaaaacgtacgcaaagttttggcagatcaacagaatgtgcctccc
tacattgttttttctgacgcaactctagttgagatgtctcagcgttacccaagaagtgaa
aaagaattaattagaattggaggaataggacagttaaaattagagaaatatgggaagacc
tttctcgaagagatcaatgcccacattgatgagcatgatataaaacccggccaaagtgtc
ggggcacccaagcgaaagttaaaaagagccccatcaggatctgtgcaagagacattcgtg
ttgtaccagcaaggaaagacaatttttcaaattgcacaatttagatcccttgccaaaacc
accattgaaggccatatcgttcagttaattgaagaagataaaattaaaaaagccactttt
ttggatgaaaaaagttgtgaagatatacggggagctgccaaaaaactagacggtcaaggc
ttaaaaaagctgaaggatcattttggggaaaagtattcctattttgaattgaaagtagcc
ttggcagggaatgatcaagaagcgaattga
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