Cyclobacterium marinum: Cycma_1275
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Entry
Cycma_1275 CDS
T01592
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmr
Cyclobacterium marinum
Pathway
cmr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cycma_1275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmr03400
]
Cycma_1275
Enzymes [BR:
cmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cycma_1275
DNA repair and recombination proteins [BR:
cmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cycma_1275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEL25046
UniProt:
G0IZK5
LinkDB
All DBs
Position
complement(1507345..1510689)
Genome browser
AA seq
1114 aa
AA seq
DB search
MDKQSFLSLYEEDPFVRNLAIGIESGGQKKINVKGLSGSMDMLIVHAISKLNGGFHLVLA
NDREEAAYLASDWQTFSGEPGFHYPASYKRPYHYEEVENANVLMRSEILNRLSDESLSGK
VLITSPEAIYEKVINKKSLKENTFAVKVGEKVDLEFIEELLSTYGFEKADFVYEAGQFAV
RGGIIDIFSYASDMPYRLELFGKEIDSIRTFDPESQLSTGAVDQISILPNIQTKMEKEIR
QSIMDFFPEGTCFWIKDFKHVTNTIKQLYDKACQHYGDLGENSSLLMAPEKLFLDESTFE
AQLEPFTLLSFGHVFDWKGVPEYQFKGQPQPSFNKQFELLVQNLNENSAKGIANIICSES
EKQVSRLTNIFHELDPALSVQTLPINLKEGFVDNSLKIACYTDHQIFERFYRYKTTKKTS
KSKALTLKEIKSLHPGDFIVHVDYGIGRFAGLEKVEVNGKLQEAIRLVFRDDDLLYVNIH
SLHKISKYSSQEGTMPIMSKLGTQEWENKKKRVKSKVKDIAKDLIKLYSKRKAASGHKFS
TDSVLQVELESSFIYEDTPDQASATADVKQDMEKPYPMDRLVCGDVGFGKTEVAVRAVFK
AVNDRKQVAVLVPTTILAMQHYQTFKERLENFPVNIDYINRFRTAKEVREIIEKVGNGEI
DILIGTHKIVNKAMNFKDLGLLVIDEEQKFGVKVKDQLKQLRVNVDVLTLTATPIPRTLH
FSLMGARDLSVIATPPPNRQPVTTEIHIFREDVIRDAVANELARGGQVFFVHNRVMEIDS
IANLILRLVPDARVIGAHGQMDGKKLEKIMVDFIEGAYDVLVSTNIIESGLDIPNANTII
INRAHMFGMSDLHQMRGRVGRSNKKAYCLLLTPPTSTLTPETRKRLQAMEEFSDLGDGFK
VAMRDLDIRGAGNLLGAEQSGFISDLGFEMYHKILDDAVQELKQTEFASIFDQDLKKVVA
PLVQDCVIETDMELLIPESYVSNISERLSLYAKLDNIKEEDSLEKFRKEIKDRFGAIPDR
VQALLETVELRWMAVNLGFEKLSLKNEQMKCYFVSSKVAPYFSSPVFMNIIKFIQSKSRF
CKIKETKDRLILIVKGVDTIEKAQNWLSEMTVDK
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
ttggacaagcaatcgtttttatcgctttacgaagaggatccatttgtaaggaaccttgca
ataggtattgaatccggaggacaaaagaaaataaatgtgaaggggctttctggtagcatg
gacatgttaattgtccatgccatcagtaagctcaatggaggatttcacctcgtcttggcc
aatgaccgtgaagaagcagcttatttggcgagtgattggcagacctttagcggtgaacca
ggctttcattatcctgccagttataaaaggccctatcattatgaagaagtggagaatgcg
aatgtattgatgcgttcagagattctcaaccgcctttcagatgaaagcttatccggtaag
gtgctaattacttcgccggaagcgatatatgagaaggtaatcaataaaaaaagcctcaag
gaaaatacttttgcagttaaggttggagaaaaggtagacttggagtttatagaagaactc
ttgagcacctatggttttgagaaagctgattttgtttatgaagcaggtcaatttgccgtt
aggggtgggatcatcgatattttttcctatgccagcgatatgccataccgcttggagctt
ttcggtaaagaaatagacagcatcaggacttttgacccggagagccaattgtcaacagga
gctgtggatcaaatcagtatattgcccaatatccagaccaaaatggagaaagaaattagg
caatctatcatggatttcttccctgaaggtacctgtttttggatcaaagacttcaaacat
gttaccaacacaattaaacaactatatgacaaagcttgtcaacattacggtgacttaggg
gaaaatagttctttactgatggcgccggaaaaattgtttcttgacgaaagtacttttgaa
gcacaattagaaccattcaccttgctttcctttggtcatgtatttgattggaaaggtgtg
ccggaatatcaatttaagggacaacctcagccctcgttcaataagcaatttgaacttctt
gtacaaaacctcaatgaaaattcagccaaaggtattgccaatatcatctgttcagaaagc
gagaaacaggtaagtcgtttgaccaatattttccatgagttggaccccgctttgtcggtt
caaacattacctattaacctgaaggaaggatttgttgataattctttgaaaattgcctgc
tatacagaccatcaaatctttgaaaggttttacaggtataaaaccaccaaaaaaacttcc
aagtcgaaggcacttacattaaaagaaatcaaaagtttgcacccgggagattttatcgtc
catgtagattatggaattggtcgctttgccggtttagaaaaggtggaggtaaatggtaag
ttgcaggaggctattcgattggtgtttagagatgatgacttgctgtatgtaaatatccat
tctttgcacaaaatttctaagtacagcagtcaggaaggcaccatgccaatcatgtctaaa
ttgggtacacaagaatgggaaaataaaaagaagcgggtaaagagcaaagtaaaggatatt
gccaaagatttaatcaagttatactctaaaagaaaggctgcttcaggtcataagttttca
acagatagtgtgcttcaggtggagttggaaagctcctttatttacgaagacactcccgat
caggcctcagctacggctgacgtaaagcaagacatggagaagccttatcctatggatagg
cttgtgtgtggggatgtaggctttggtaaaacggaagtagcggtaagagcagtatttaaa
gctgtgaatgatagaaagcaggtagcagtattggttcccactactattttggccatgcaa
cattaccagacctttaaagaaaggctggaaaatttccctgtcaacattgattatatcaat
cggttcagaactgccaaagaagtcagagaaattatagaaaaagtggggaatggtgagatc
gatattctaatcggtactcacaaaattgtcaataaggcaatgaattttaaggaccttggc
ttgttggtcattgatgaggaacaaaagtttggagtcaaagtcaaagatcagttaaaacag
cttcgagtcaatgtggatgtacttacactcacggctactcccatacctcggacccttcat
ttttcattaatgggtgccagagatctttccgttattgccacacctcccccgaataggcag
ccggtaacaaccgaaatccatatatttagagaggatgttatacgagatgcggtggccaat
gaattagcccgtggaggtcaagtgttttttgtacacaatagggtcatggagattgactca
attgcgaatttgatcttgagattagtgcctgatgcaagggttataggcgcccatgggcag
atggatgggaaaaagcttgagaagatcatggtagactttatagaaggagcttacgatgta
ttggtatctaccaatattattgagtctgggcttgatataccgaatgcaaataccatcatt
atcaatcgggcgcatatgtttgggatgagtgatttgcatcagatgagaggtagagtagga
aggagtaataaaaaagcctattgtctattattaacccctccaacttccaccctgacccca
gagaccagaaaaaggttacaagccatggaggaattttctgatcttggtgacggatttaag
gtagccatgagggatttggatattcgtggagccggtaatttattaggagcagaacaaagt
ggatttatatctgatttgggttttgaaatgtaccacaaaatacttgatgatgctgttcag
gaactcaagcaaacggaatttgcatcaatttttgaccaagacttgaaaaaggtggtggca
ccattggttcaagattgcgttatagagacagatatggagcttctgattcccgaaagctac
gtaagcaatatttcagaaagattgagtttgtacgctaaattggataatatcaaagaggag
gactcccttgagaagtttagaaaggagatcaaggataggtttggtgccattcctgatagg
gttcaggcattgttagaaacagttgaactcagatggatggctgttaaccttggatttgaa
aaactttcattgaaaaatgaacaaatgaaatgctacttcgtttcttccaaagtagccccc
tattttagctctcctgtattcatgaatattattaagtttattcaatcaaaaagcaggttt
tgcaaaataaaggaaaccaaagatcgtttaatcctcatagtaaagggagtggataccatt
gagaaagcccaaaattggctctctgaaatgaccgtagataaataa
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