Cyclobacterium marinum: Cycma_1620
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Entry
Cycma_1620 CDS
T01592
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
cmr
Cyclobacterium marinum
Pathway
cmr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cycma_1620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmr03400
]
Cycma_1620
DNA repair and recombination proteins [BR:
cmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cycma_1620
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cycma_1620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
UvrA_DNA-bind
AAA_21
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_25
AAA_33
AAA_22
nSTAND3
Viral_helicase1
APS_kinase
cobW
NACHT
NTPase_1
EcoRI
Motif
Other DBs
NCBI-ProteinID:
AEL25374
UniProt:
G0J5S3
LinkDB
All DBs
Position
1910412..1913231
Genome browser
AA seq
939 aa
AA seq
DB search
MGTTTVNTNTSLENLDPKSFIIIKNARVNNLKNLSIAIPRNKLIIITGLSGSGKSSLAFD
TLFAEGQRMYVESLSSYARQFLGRMEKPEVEYIKGVSPAIAIQQGVNTKNPRSTVGTTTE
IYDYLKLLFSRIGRTISPISGEEVKHHTVTDVVSYIHGFDEGAKVMISCPLHFSPERAKE
KELEILLQKGFTRVLIDGQVSFVEDLLELDKLPEGNFEILVDRVSVMKEDEGNQFRIADS
VQTAFFEGLGECKVVIPDTASRSFSDKFELDGIQFELPSVNFFSFNNPYGACRTCEGFGS
VLGIDPDLVIPDKSISIFEGAIAPWRGETTKKWLQPLLKDGIKFDFPIHRPYEDLDEKDK
AVLWTGNKYFKGLNDFFAFLESKLHKIQYRVMLSRFRGRTVCPDCKGTRIRKDASFVKIA
GKSITDMVLLPIDKALPFFETLELTETERNVSQRLLKEIVNRLEYLDQVGLGYLTLNRLT
SSLSGGEFQRIKLATSLGSALVGSMYILDEPSIGLHPRDTERLITVLKALRDLGNTVIVV
EHEEKIILTADQVIDIGPDAGVHGGELVFQGNQKELMEAGNTHTARYLSGEESINVKLQN
RKWKEYILIQGAKENNLKNITVKIPLEVLTVVTGVSGSGKSTLVKKVLYPALGKILGSVN
EESGKFDKIDGDYRNVNRIEFVDQNPIGKSSRSNPVTYVKAYDGIRALYADLPISKQRGY
KPAFFSFNVDGGRCEACQGEGTQKIEMQFMADIYLTCESCKGKRFKNEILDAKYKGKDIS
EVLDLTIDEAMEFFEEKQGIIQKLRPLQEVGLGYIGLGQSSNTLSGGEAQRVKLASFLGK
NDTKNKEKILFIFDEPTTGLHFHDIKKLLFSINSLIDQGHTVLIIEHNTEVIMAADWVID
LGPEGGEKGGNVIFEGVPEDLMKEENNYTGKYLVELNKA
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgggtacaactactgtcaatacaaatacttcactcgagaacctggatcctaaatccttt
attattataaagaatgcccgggtcaataacctcaaaaacctaagcatagccattcccaga
aataaactgattattataaccggtttatcaggttctggaaagtcttctttagcatttgat
acgctttttgctgaaggacaaagaatgtatgtggagagcctgagctcttatgccagacag
tttttgggcagaatggaaaaacccgaagtggaatacatcaaaggagtatcccctgccatc
gccatccaacaaggtgtaaatacaaaaaacccaagatctacagtaggtacaaccaccgaa
atctacgattacctcaagctattatttagtagaatagggcgaaccatttctcccataagt
ggtgaagaagtaaaacatcataccgtaactgatgtagtctcctatatccatggttttgat
gaaggggccaaggtaatgatcagctgtccgctacattttagtccggaaagagctaaagag
aaagagctggagattttgttacaaaaaggttttacaagggttcttattgatggtcaagta
tcatttgtagaagacttacttgaattggataaattacctgaaggaaactttgagattctt
gtcgacagggtatcagtgatgaaggaagatgaaggtaaccaatttagaattgcagacagt
gtacaaacagccttttttgagggattgggagaatgtaaggttgttattcctgatactgcc
tctaggtcctttagtgataaatttgagctggatggtattcaatttgaattaccatccgtt
aattttttcagtttcaataacccatatggtgcctgcagaacttgtgaaggatttggatca
gttttggggattgatccagatttagtcattccagacaagtccatttcaatttttgaaggg
gccatagccccttggcgtggggagactacaaaaaaatggttacagcctttattgaaggat
gggataaagtttgattttcccatccacagaccatatgaagatcttgacgaaaaggacaag
gctgtattatggactggaaataaatatttcaaaggcttaaatgattttttcgcttttctg
gaaagcaaacttcataaaatccaataccgagtaatgctttctagatttaggggaagaaca
gtttgtccggactgtaaagggacacgaataagaaaagatgcttcttttgtaaagattgca
ggaaaatccatcaccgatatggttttacttccaatcgataaagccctacctttctttgaa
actttagaacttacagaaacagaaagaaatgtatctcaaagattgctcaaagaaatcgtc
aatagactcgaatacctagaccaagttggactaggttacttgacccttaatcgtctaact
tcttctctttcaggaggtgagtttcaacggatcaaattggcaacttctttgggcagtgct
ttagtgggatccatgtatattctagacgaaccgagtattgggttacaccccagagatacg
gagcgtttgatcacagttttaaaagccctaagagatttaggcaatacggtgattgtggtg
gagcatgaagagaaaattatccttacggctgaccaagtcattgacataggcccggatgca
ggtgttcacggaggtgaattggtttttcaaggaaaccaaaaagagttgatggaggccggc
aatacgcatactgcgcggtaccttagtggagaagagtccattaatgtaaagttgcaaaac
agaaaatggaaggaatacattttaattcaaggagctaaggaaaataaccttaaaaatatc
actgtaaaaatacctttagaagtattaacagtagtgacaggtgtaagtggctcaggcaaa
tctacccttgtaaaaaaagtattgtatcctgccttaggaaaaatactgggtagtgtaaat
gaagagtcgggtaaatttgataaaattgacggtgattatagaaacgtaaatcgaattgaa
tttgtagaccaaaatcctattggtaagtcttccaggtcaaatcctgtaacctacgtcaag
gcctatgatggaattagagcattgtatgcagacctccccatatcaaagcaaagaggttat
aaacctgcattctttagttttaatgttgatggtggcaggtgtgaagcctgtcagggggag
ggaactcagaagatcgagatgcaatttatggccgacatttacctcacctgcgaatcttgt
aaaggaaagcgctttaaaaatgaaatcctggatgccaaatacaaaggaaaagatatttcc
gaagtcctagatttaacaattgatgaagccatggaattttttgaagagaaacagggcatc
attcaaaaattaaggccgctacaagaggtaggcttgggctatattggtcttggccaatcc
agcaatacattgagtggcggagaagcacagcgggttaaactcgcatccttcttaggaaaa
aatgacaccaaaaataaagagaaaatactatttatttttgatgagcctacaacaggactt
cactttcatgacatcaaaaaattgctattttcaattaattccctgattgaccaaggtcat
acggtactaatcattgaacacaacacagaggttattatggctgcagattgggtgatcgat
ttagggcctgaaggaggggaaaaaggtggcaatgttattttcgaaggggtaccggaagat
ttaatgaaggaagaaaataattataccggaaaatacctcgtagagctcaataaggcataa
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