Cyclobacterium marinum: Cycma_2050
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Entry
Cycma_2050 CDS
T01592
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cmr
Cyclobacterium marinum
Pathway
cmr03030
DNA replication
cmr03430
Mismatch repair
cmr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cycma_2050
03430 Mismatch repair
Cycma_2050
03440 Homologous recombination
Cycma_2050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmr03032
]
Cycma_2050
03400 DNA repair and recombination proteins [BR:
cmr03400
]
Cycma_2050
Enzymes [BR:
cmr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Cycma_2050
DNA replication proteins [BR:
cmr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Cycma_2050
DNA repair and recombination proteins [BR:
cmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Cycma_2050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
GST_C
MG4
Motif
Other DBs
NCBI-ProteinID:
AEL25797
UniProt:
G0J148
LinkDB
All DBs
Position
complement(2385731..2390017)
Genome browser
AA seq
1428 aa
AA seq
DB search
MYLIFDTETTGLPRNYNAPMSDLDNWPRLVQLAWQLHDEKGKLISNNNYIVKPEGFTIPY
NSEKIHGISTQRALKEGHDLKKVLEIFEEDLKKTTFLVGHNIGFDISIVGAELLRTERPI
VDLEKQALDTKDISTEFCAIPGGKGGKFKWPTLFELHQKLFGEGFGDAHDAAYDVDATAK
CFFGLIKEGVQPPIEGITLDEIIYEPPNLEAANFAAAKDEVKVSAQKILKAADRADISDL
KDTPFTHLHVHTQFSILQSTSEIPAIIRRAKELGMPALAMTDHGNMMGAFNFVKEAFNND
IKPILGCEFNLCRDRKNKSNKDDGYQTVLLAKNKAGYHNLAKLASYANIEGFYYVPRIDR
EVLVQYKGDLIATTGGLWGEVPYLILNVGETQAEEAFVWWHEQFGDNFYIELNRHGIPEE
EKVNEVLLQWAAKYNVKYFAANNTYYNAQEDAKSHDILLCVKDGELVEKPKKYIGKRGRE
YRYGFPNDEFYLKSPEEMKKLFADLPEAISCTDEIVSKIEPFKLAREVLLPKYDIPEKFV
DPKDDEDGGKRGENAFLRHLTYEGAKKRYGEITDEIRERLDFELETIERTGYPGYFLIVQ
DFTGAAREMGVSVGPGRGSAAGSAVAYCVGITNVDPIAYDLLFERFLNPDRVSLPDIDID
FDDEGRQRVIEYVIKKYGANQVAQIITYGTMAAKSAIRDTARVLNLPLSEADRLAKLVTD
IKLKALFELANDRAKLSAKLKNNNDNLEKALELIRISKGNDDNSKTINQAKVLEGSVRNT
GIHACGVIITPDDITNFVPVALAKDSEMVCTQFDNSVVESAGLLKMDFLGLKTLTLIKDA
VRIIKERHGIELDPENFPIDDVKTYELFQRGETVGIFQYESAGMQKYMRELKPTVFADLI
AMNALYRPGPLEYIPSFIKRKHGLETITYDLDDMKEYLEETYGITVYQEQVMLLSQKLAD
FTKGEADVLRKAMGKKQKNVLDEMKPKFINQAAAKGHDSKKLEKIWKDWEAFASYAFNKS
HSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMNDITQVTFFMEECKRMGIQVLGPDVNES
KSDFTVNMEGQIRFGLAAIKGAGNAAVNAIIEEREAGGLYKDVFTFTKRVNLKAVNKKTM
EVLAMAGGFDCFVDFHRRQYLEAPDNEATLLEKAIKYAQKVIQEEESSQVSMFGGGGGLD
IPVPSIPNMEPFSQLQQLNIEKEVVGLYISGHPLDQFKVEIEAFTNTGLPELADLSQLKS
KGEIKLAGAVTSFAHRTTKNGKPFGTLTMEDYHGGHTFFLFGEDYVKFKEYFMHNWFLYI
SGSVHPNKYKPAEFEFKINQITLLNEIRGKMIKGLRVHIDLDDLGLELMEKLEAITQKYK
GDAKLYINIIDNKENLTLDLISAKYRIDPSNELIQALDQIPEVAYKIL
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtacctgatatttgataccgaaacaaccggactcccaaggaactacaatgcgcccatg
tctgacctggacaattggcctcgtttggttcaattggcttggcagcttcatgatgaaaag
ggaaagctaatttcaaacaataattatatagttaaacctgaaggttttactataccctac
aattcggaaaaaattcatggtatttcaacccaaagggcattaaaagaaggtcacgaccta
aaaaaagtcctagagatttttgaagaagatctcaaaaagacaacctttctggttggccat
aatataggttttgatatttcgattgtaggggctgaattattaagaacggaacgccccatt
gtagatctggagaaacaagccttagataccaaggatatatctactgaattttgcgccatt
ccgggtggaaaaggaggaaaatttaaatggcccactttatttgaattgcatcagaagctt
tttggtgagggttttggtgatgcccacgatgctgcttatgatgtagatgccacagcaaaa
tgttttttcggtcttatcaaagaaggagtacaaccacctatagaagggatcaccctggat
gaaattatttatgaaccaccgaatcttgaagccgcaaattttgctgcagcaaaggacgag
gtaaaggtatcggctcaaaaaatccttaaagccgctgatcgtgcagatatttcagaccta
aaggatactccttttacgcatttgcatgtccatacccagttttctatccttcaatccaca
tctgaaattcctgccatcattagaagggcaaaagaattggggatgccggcattggcaatg
accgaccatggcaatatgatgggggcatttaactttgtaaaggaagcatttaacaatgac
atcaaacccatcctaggttgtgaatttaacctttgtagagatcgcaaaaataaatccaat
aaagacgatggttaccaaactgttttattggctaaaaacaaagcgggctaccataacctc
gccaaactggcttcttatgccaacatagagggcttttactatgtacctagaatcgataga
gaagttttggtgcaatacaagggagaccttatcgctactacaggaggcctgtggggagag
gttccttatcttattcttaatgtgggagaaacccaagcggaagaggcctttgtatggtgg
cacgagcaatttggagataatttctatattgaacttaatcggcacggaatacctgaggaa
gaaaaggtaaatgaagtattacttcaatgggcagcaaaatacaatgtaaagtattttgct
gccaataatacctattacaatgcccaagaagacgccaagtcccacgatattttgttgtgc
gtaaaagatggggagctggtagaaaaacctaagaaatacataggaaaaagaggacgcgag
tatcgctatggttttccaaatgatgagttttaccttaaatctcccgaggagatgaagaaa
ctctttgcagatttacccgaggccatttcttgtacagatgaaatcgtatccaaaatagaa
cctttcaagctggcaagagaagtactcttgcctaaatatgacattcccgaaaaatttgta
gatcctaaagatgatgaagatgggggaaaaagaggagagaatgcatttcttcgccacctc
acatacgagggcgcgaaaaaaagatacggagaaatcactgatgaaattcgcgaacgattg
gattttgaattggagacgatcgaaaggacaggatatcccggttatttcttaattgtacag
gattttaccggagcggcgagagaaatgggagtatcagttggaccagggcgtggctctgca
gcaggatctgccgttgcttattgcgtgggtataacgaatgttgatcccattgcatacgat
ttactatttgagagattccttaatcctgatagggtctctctccctgatattgatattgat
tttgatgatgaaggcaggcaaagggtaatagaatatgtaatcaaaaaatatggtgccaat
caggtggcacaaatcataacctatggaaccatggctgccaagtctgccattcgagataca
gcaagggtacttaaccttcccctttctgaagcagatagattggctaagttggttacggat
atcaaacttaaagctctctttgagctggccaatgacagggccaaactctcagctaagctt
aaaaacaacaatgacaatttagaaaaggccttagagttaatcaggatatcaaagggaaat
gacgacaactccaaaaccataaaccaagcaaaagtactggaaggttctgtgaggaacaca
gggatacatgcttgtggggtcataatcacaccagatgatattactaatttcgtgcctgtt
gccttggcaaaggattcggagatggtttgtacccaatttgacaactccgtagtggaaagt
gccgggttgctaaaaatggatttcttgggtctaaaaacccttaccctaattaaagatgct
gtccgcatcatcaaagaaaggcatggtattgagctcgatccggaaaactttcctattgac
gatgtcaaaacatatgaactctttcaacgaggtgaaactgtaggtatattccaatatgaa
tctgccggcatgcaaaaatacatgcgggaattaaaacctacggtttttgctgaccttatc
gccatgaatgccctttacaggccgggtccattggagtacatccctagtttcattaagcgg
aagcatggtttagaaaccatcacctatgatttggatgacatgaaggaataccttgaggag
acctatggtattacggtctaccaagagcaggtaatgcttctatctcaaaaattagcggat
tttaccaaaggtgaagcggatgttctccgtaaagccatgggtaaaaagcaaaagaatgtg
ctggatgagatgaaaccaaaattcatcaaccaagcagctgcaaaagggcatgacagcaaa
aaattagaaaaaatatggaaggactgggaagccttcgcctcctatgcttttaataaatcc
cattctacctgttatgcctggattgcttaccaaacagcttatcttaaagcccattatccg
gctgaatacatggcttcggttttgagcaataacatgaatgacattacccaggtaactttc
tttatggaagaatgtaaacgaatgggaattcaggtacttgggccggatgtcaacgagtcc
aagagtgattttaccgtaaatatggaaggccagattagatttggtttggcagcaataaaa
ggagccggcaatgcagctgtaaatgccattatagaggagagggaagcaggaggcttgtac
aaagacgtctttacattcaccaaaagagtaaaccttaaggcagtcaataaaaaaaccatg
gaagtattggcaatggcgggagggtttgactgttttgtagattttcatcgaagacaatac
ctagaagccccggataatgaagccacgctattagaaaaagccataaaatatgcccaaaag
gtaatacaggaagaagaaagttcccaagtttccatgtttggaggtggcggggggctggac
attcctgttccttctattcctaatatggagcccttcagccaattgcagcaattaaatatt
gagaaagaggtagtgggtctttatatttcagggcatcctttggatcaatttaaagtagaa
atagaagcttttaccaatactggacttccggagctagcggatctttcacagcttaaatca
aaaggggaaatcaaacttgccggagcagtgacttcatttgcgcaccgcaccacaaaaaat
gggaaaccattcggcacacttacgatggaagattaccacggaggccacacctttttctta
tttggtgaggattatgtgaaattcaaggagtattttatgcacaattggtttttatacatt
tcaggatcagtacatccaaacaaatacaaacctgctgaatttgaatttaaaatcaatcaa
atcaccttgttaaacgagatccgaggaaaaatgatcaagggtctaagggttcacattgac
ttggatgatttggggttagaattgatggaaaaattggaggccatcactcaaaaatacaag
ggagatgcaaaattatacatcaatataatagacaataaggagaatttgaccttagactta
atctccgcaaaataccgaatagacccctctaatgaactgattcaagcattggatcaaatc
ccggaagtagcttataaaatcctttga
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integrated database retrieval system
