Cyclobacterium marinum: Cycma_4723
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Entry
Cycma_4723 CDS
T01592
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cmr
Cyclobacterium marinum
Pathway
cmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cycma_4723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmr03019
]
Cycma_4723
03009 Ribosome biogenesis [BR:
cmr03009
]
Cycma_4723
Enzymes [BR:
cmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cycma_4723
Messenger RNA biogenesis [BR:
cmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cycma_4723
Ribosome biogenesis [BR:
cmr03009
]
Prokaryotic type
rRNA helicases
Cycma_4723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
TH1
VD10_N
Motif
Other DBs
NCBI-ProteinID:
AEL28409
UniProt:
G0J4G9
LinkDB
All DBs
Position
5740463..5742160
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AA seq
565 aa
AA seq
DB search
MEKEILFSDLGVSEEILRAVEDMGYTQPSPIQAQTIPLLLQGADVIGQAQTGTGKTAAFG
IPIIDSIDPNSKKPQALILCPTRELAVQVEGEIVKLTKYNRKISSTCIYGGESIDRQIRS
LKKGVQIVVGTPGRIMDHMDRRTLDLSQVGIIVLDEADEMLDMGFRDDIEKILSSMPIER
QTVFFSATMPKPILELTRKYQTDPEIIKVLRKELTVENISQLYFDVRSGLKTDLISRLIN
LHQYKLSVIFCNTKRVTDEVTEELTAKGIPAEALHGDLSQAQRTKVMNKFRKGHCSVLVA
TDVAARGIDVENVEAVFNYDLPLDEENYVHRIGRTGRAGRSGTAISFVSGRRDSGRLRDL
ERFIKTTIEKAAPPSVDQLIQMKKDQLTKDIHRQLAKEEDNSIYEQAVESLLAEGISIEQ
VALSLVKMQLGEAIDKFKEMNFTPDKDRGGRDDRRKRDRNDRGSSRGRNGERGDRSGRRG
NKKEREPNMARLFLNLGKKDRIRPNDIVGAIAGETGVSGGSIGEIDIYDSFSFVDIPKKD
ASHVINVMNTNTIKGKSVNFEISKP
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaaatattattttcagaccttggggtttcggaagaaatcttaagggcagtg
gaagatatgggctatacccaaccttccccaattcaagcacaaaccattcctttattattg
caaggagctgatgtcatcggccaagctcaaacgggtacagggaagaccgctgcatttggc
atcccgattattgacagtattgatcctaatagcaagaagccgcaagccctaattttgtgt
cctactagggaacttgctgtacaagttgaaggtgagatcgttaaactaaccaaatacaat
agaaaaatatcttctacctgtatatatggtggcgaatcaattgacagacaaattagaagc
ttaaaaaaaggtgttcaaattgtggtgggtactcccggcagaattatggaccatatggat
agaagaaccttagacttaagtcaagttggcatcattgtgttggatgaagctgatgaaatg
ctggacatgggttttagggatgatattgaaaaaatactaagttctatgccaatcgaaagg
caaacggtattcttttctgccaccatgcctaagccaattctagaacttactagaaaatat
caaacagatccggagatcatcaaggttttaagaaaagagcttaccgttgaaaacatatct
caattgtattttgacgtaagatcaggattaaaaacagatttgataagcagacttattaat
cttcaccaatataagcttagtgtaattttctgtaatactaaaagggttacagatgaagta
accgaagagttaacagctaaaggtatccctgctgaagcattgcatggagatttgtctcaa
gcacaaagaactaaagttatgaacaagttccgtaaaggacattgttcagttttagtagct
acagacgtagctgcaaggggtatagatgtagaaaacgttgaagctgttttcaattatgac
cttccccttgatgaggaaaattatgtacatagaattggtagaacaggtagagccggaagg
tcaggaactgccattagttttgtgtctggaagaagagattcaggaaggctaagagatctt
gaaaggtttatcaaaaccaccattgagaaagctgcccctccatccgtagaccagctgatt
caaatgaaaaaagatcagttgaccaaagatattcataggcaactggcaaaagaagaagac
aatagcatatacgagcaggcagtagaaagccttcttgcagaaggaatttctattgagcaa
gtcgccttaagtttggtgaaaatgcaattgggtgaagccattgataagtttaaagaaatg
aatttcacccctgataaggatcgaggtggtagagacgatagaagaaaaagagaccgcaac
gatagaggatcatctagaggtcgtaatggagaaagaggcgatcgcagcggaagaaggggt
aataaaaaagaaagagaaccaaatatggctcgtctctttttaaatttaggaaagaaagac
cgaattcgtcctaatgatatcgttggtgctatcgcaggagaaactggagtatcaggtggt
agtataggtgaaattgatatttatgatagcttctcttttgtggacatccctaaaaaagat
gcaagtcatgtcattaatgttatgaataccaataccatcaaaggaaagtcagtcaatttt
gaaatatctaaaccttaa
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