Clavibacter sepedonicus: CMS0056
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Entry
CMS0056 CDS
T00678
Name
(GenBank) putative helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cms
Clavibacter sepedonicus
Pathway
cms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMS0056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cms03019
]
CMS0056
03400 DNA repair and recombination proteins [BR:
cms03400
]
CMS0056
Enzymes [BR:
cms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMS0056
Messenger RNA biogenesis [BR:
cms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CMS0056
DNA repair and recombination proteins [BR:
cms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CMS0056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
CAQ00181
UniProt:
B0RHS3
LinkDB
All DBs
Position
60153..62114
Genome browser
AA seq
653 aa
AA seq
DB search
MRGGASSSPRSSSPPAADRPPDTIALMTSTPPAPASTGGGTALAPALERLGTVFGYDAFR
GDQQEIVEHVIGGGDALVLMPTGGGKSLCYQIPSLVREGTGVVISPLIALMQDQVDALRA
VGVRAAFLNSTQDLETSREVERALLDGDLDLLYLAPERLILDRMGRLLDEARIALFAIDE
AHCVSQWGHDFRKDYLALSMLQERWPEVPRIALTATANEATHADITARLGLEDARHFVSS
FDRPNIRYRIVPKAEPRKQLVDLIRTEHAGDAGIVYCLSRKTVEQTAEALNKQGITALPY
HAGLDAAVRQRNQARFLREDGIVMCATIAFGMGIDKPDVRFVAHIDLPKSIEGYYQETGR
AGRDGLPSTAWLAYGLQDVVQQRRMIDQSEGDAQHRRRLSQHLDAMLALCETVGCRRVQL
LRYFSEETGPCGNCDTCLEPVETWDATVPSQKLLSTVVRLQRERNQRFGAAHLIDILLGN
ETDRVRQQGHDQLATFGIGGELTDVQWRGVVRQLLAQGLLGVSDDGYGTLVITPGSGDVL
TGSRQVPMRQEPERIVRGRGTRTTRSKGGQVVDLPEEAQGLFEELRAWRSEQAKEQGVPA
YVVFADVTLREVATVRPQDLGQLAGITGVGQKKLDTYGEGLLAVVAAGSVAAD
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgcgggggggggcgtcgtcgtccccacgctcctcctccccgcctgccgccgaccggccc
ccggatacgattgccctgatgacctccacccctcccgctcccgcctcgaccggcggcggc
accgcgctggcccccgccctcgagcgcctcggcacggtcttcgggtacgacgcgttccgc
ggcgaccagcaggagatcgtcgagcacgtcatcggcggcggcgacgccctcgtgctcatg
cccacgggcggcggcaagtcgctctgctaccagatcccgagcctcgtccgcgagggcacc
ggcgtcgtcatctcgcccctcatcgcgctcatgcaggaccaggtcgacgcgctgcgcgcc
gtcggcgtccgcgccgcgttcctcaactccacgcaggacctcgagaccagccgcgaggtc
gagcgcgccctcctcgacggcgacctcgacctgctctacctcgcgcccgagcgcctcatc
ctcgaccggatgggccgcctcctcgacgaggcgcgcatcgccctgttcgccatcgacgag
gcgcactgcgtctcccagtggggccacgacttccgcaaggactacctggcgctgtcgatg
ctccaggagcgctggcccgaggtgccgcgcatcgcgctcaccgcgacggccaacgaggcc
acgcacgccgacatcaccgcgcgcctcggcttggaggacgcgcgccacttcgtctcctcg
ttcgaccggccgaacatccgctaccgcatcgtgcccaaggccgagccgcgcaagcagctg
gtggacctcatccgcaccgagcacgcgggcgacgcgggcatcgtctactgcctctcccgc
aagaccgtcgagcagacggccgaggcgctgaacaagcaggggatcaccgcgctgccgtac
cacgcgggcctcgacgccgccgtccggcagcgcaaccaggcccgcttcctccgcgaggac
ggcatcgtcatgtgcgccaccatcgcgttcggcatgggcatcgacaagcccgacgtgcgc
ttcgtcgcccacatcgacctgcccaagtccatcgagggctactaccaggagaccgggcgc
gcgggccgcgacggcctgccgtccaccgcctggctcgcctacggactgcaggacgtcgtg
cagcagcgtcgcatgatcgaccagtccgagggcgatgcgcagcaccgccgccggctgtcg
cagcacctcgacgcgatgctcgcgctctgcgagacggtcggctgccgccgggtgcagctc
ctgcgctacttcagcgaggagacgggtccgtgcggcaactgcgacacgtgcctcgaaccc
gtcgagacgtgggatgcgacggtgccgtcgcagaagctgctgtccaccgtcgtgcggctg
cagcgcgagcggaaccagcgtttcggcgcggcgcacctcatcgacatcctgctcggcaac
gagaccgaccgcgtccgccagcaggggcacgaccagctcgccacgttcggcatcggcggc
gagctcaccgacgtgcagtggcgcggcgtggtccggcagctgctggcccagggcctcctc
ggcgtgagcgacgacggctacggcaccctcgtcatcaccccgggcagcggcgacgtgctc
accggatcccggcaggtgcccatgcggcaggagcccgaacgcatcgtgcgcgggcgcggc
acccgcaccacgcgcagcaagggcggccaggtggtggacctgcccgaggaggcgcagggc
ctcttcgaggagctccgcgcgtggcgctccgagcaggccaaggagcagggcgtgcccgcg
tacgtggtgttcgccgacgtcaccctgcgcgaggtcgcgaccgtgcgcccgcaggacctc
ggtcagctcgcgggcatcacgggcgtcggccagaagaagctcgacacgtacggcgagggg
ctgctcgcggtcgtcgccgccggatccgtcgcggccgactag
DBGET
integrated database retrieval system
