Clavibacter sepedonicus: CMS0187
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Entry
CMS0187 CDS
T00678
Name
(GenBank) probable DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cms
Clavibacter sepedonicus
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cms03032
]
CMS0187
03400 DNA repair and recombination proteins [BR:
cms03400
]
CMS0187
Enzymes [BR:
cms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CMS0187
DNA replication proteins [BR:
cms03032
]
Prokaryotic type
DNA Topoisomerases
CMS0187
DNA repair and recombination proteins [BR:
cms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CMS0187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
CAQ00310
UniProt:
B0RAE2
LinkDB
All DBs
Position
223301..226339
Genome browser
AA seq
1012 aa
AA seq
DB search
MYGVPCRGPRRTSPRIGSDPSGHASRTPGRSSVPMNAYIRSHVPGTKKLVIVESPAKAKT
IAQYLGSGYEVQASVGHIRDLIEPKNLPPELKKGTLGKFSVDVENGFEPYYVVSDQKKKT
VADLKRALKDADELFLATDEDREGEAIAWHLLQVLKPKVPVKRMVFHEITKEAIERARDS
TRDIDTALVDAQETRRILDRLYGYEVSPVLWRKVGPGLSAGRVQSAATRLVVDRERERLA
FVTASYWDLTASLSPLEQELPFDARLVRIDGARIATGRDFDDKGALKNDSRPLDASSAEA
LAEALRDPSVPLKVQSVESKPYTRRPAAPFTTSTLQQEAARKLRFSARQTMSVAQSLYEN
GYITYMRTDSPSLSQQAINAARKQAAELYGPETVPDKPRLYAGKSKNAQEAHEAVRPAGE
TFRTPQQLASTLRGNDHKLYDLIWKRTIASQMADAKGSTASVVIAAGPTSAGEVAEFAAS
GTVITFRGFLAAYEESRDEERHGAAEPREAKLPDLKKGQDLRLVDVDAKGHETSPPPRYT
EASLVKTLEELGIGRPSTYAAIISTIVDRGYVTPRGTALVPNWIAFSVVRLLEEFFTELV
QYDFTAGMEDDLDRIAEGAAERVDWLKGFYYGNDAHKGLRPTIDNLGEIDAKEINSLRIA
DDITLRIGKYGPYLEVHEEGAAADATPRRVNLPEDLAPDELTAAKARELIDAPVVTDRVI
GINPDNGKQVVAKDGRYGPYVTELDPEPEPEAAPAAAADGVDPATGEVLESASTTTTAAP
AKKAPAKKPAAKKAAAVKPRTASIFKSMDLATVDLETALRLLDLPRVVGEDPETATPITA
QNGKYGPYLKKGTDSRSLTSEEQIFEIDLPGALEVFAQPKYGARRPSSALKEFDADPVSG
KGIKVKDGRFGPYVTDGETNATIPKSESVEDIDFDRAVELLADKRAKGPAKPKAKAKAPA
KAKAKAPAKAKAPAKPGAAAKATGTTAAATKAAATRAANKAAAAAATASDAT
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
gtgtatggtgtgccttgtcggggaccccgccgcacgtcgccccggatcggatccgatccg
agcgggcacgcatcccggacaccgggccggtcatcggtccccatgaacgcatatataagg
agtcacgtgcccggcacgaagaagttggtcatcgtcgagtcgccggccaaggccaagacg
atcgcccagtacctgggcagcggctacgaggtccaggcctccgtgggtcacatccgcgac
ctcatcgagcccaagaacctgccgccggagctgaagaagggcacgctcggcaagttctcc
gtggacgtggagaacggcttcgagccgtactacgtcgtcagcgatcagaagaagaagacg
gtcgccgacctcaagcgggcgctcaaggacgccgacgagctcttcctcgcgacggatgag
gaccgagagggcgaggccatcgcatggcacctgctgcaggtgctgaagccgaaggtgccg
gtcaagcgcatggtgttccacgagatcaccaaggaggccatcgagcgcgcacgggacagc
acgcgcgacatcgacacggccctcgtcgacgcgcaggagacgcgacgcatcctcgaccgc
ctctacggctacgaggtgtcgcccgtgctctggcgcaaggtcggacccgggctgtcggcg
ggccgcgtgcagtccgcggcgacccggctcgtcgttgaccgcgagcgcgagcgcctggcc
ttcgtcaccgcctcgtactgggatctgacggcgtcgctctcgccgctcgagcaggagctg
ccgttcgatgcccggctcgtccgcatcgacggcgcccgcatcgcgacgggtcgcgacttc
gacgacaagggcgcgctgaagaacgactcgcgcccgctcgacgccagcagcgcggaggcc
ctcgccgaggcgctccgcgacccctcggtgccgctgaaggtgcagagcgtcgagtcgaag
ccctacacgcgtcgccctgccgcgccgttcaccacgtcgactctccagcaggaggcggcg
cgcaagctccgcttctccgcacggcagacgatgagcgtggcgcagtcgctctacgagaac
ggctacatcacctacatgcgcactgactcgccctcgctctcgcagcaggcgatcaacgcg
gcgcgcaagcaggccgcggagctctacgggcccgagaccgtgccggacaagccgcgcctc
tacgcgggcaagagcaagaacgcgcaggaggcccacgaggccgtgcgccccgccggcgag
accttccgcactccccagcagctcgcctccacgctgcgcggcaacgaccacaagctctac
gacctcatctggaagcgcaccatcgcgtcgcagatggcggacgcgaagggatccaccgcg
tcggtcgtcatcgccgcaggacccacgtccgcgggcgaggtggccgagttcgccgcctcg
gggacggtcatcacgttccgcggcttcctggcggcctacgaggagagccgcgacgaggag
cgccacggcgccgccgagccacgcgaggccaagctgcccgacctcaagaagggccaggac
ctgcgcctcgtcgacgtcgacgcgaaggggcacgagaccagcccgccgccgcgctacacg
gaggcgagcctcgtcaagacgctcgaggagctgggcatcggtcgtccgtcgacctacgcg
gccatcatctcgacgatcgtcgaccgcggctacgtcacgccgcggggcaccgcgctcgtc
ccgaactggatcgccttctcggtggtgcggctgctggaggagttcttcacggagctggtg
cagtacgacttcaccgcgggcatggaggacgacctcgaccgcatcgcggagggggcggcc
gagcgcgtcgactggctgaagggcttctactacggcaacgacgcgcacaaggggctccgc
cccaccatcgacaacctcggcgagatcgacgccaaggagatcaactcgctgcgcatcgcg
gacgacatcacccttcgcatcggaaagtacgggccctacctggaggtgcacgaggaggga
gccgccgcggacgcgacgccccgccgcgtcaacctgccggaggacctcgctccggacgag
ctgacggcggccaaggcccgcgagctcatcgacgcgccggtcgtcaccgaccgcgtcatc
ggcatcaaccccgacaacggcaagcaggtcgtggcgaaggacggccgctacggcccctac
gtcaccgagctcgatcccgagcccgagcccgaggccgcgcccgccgccgctgcggacggc
gtcgatcccgcgaccggcgaggtgctcgagagcgcgtcgacgacgaccacggcggcaccc
gcgaagaaggcgcccgccaagaagccggcggcgaagaaggcggcggccgtgaagccgcgc
acggcctccatcttcaagtcgatggacctcgccacggtcgacctcgagacggccctgcgc
ctcctcgacctcccgcgggtcgtgggtgaggacccggagacggccacgcccatcacggcc
cagaacgggaagtacggcccgtacctgaagaaggggacggactcgcgttcgctcacgagc
gaggagcagatcttcgagatcgacctgcccggcgccctcgaggtgttcgcgcagcccaaa
tacggtgcgcgccgtccgtccagcgcgctcaaggagttcgacgcggatcccgtgagcggt
aagggcatcaaggtgaaggacggccgcttcggcccgtacgtcaccgacggcgagaccaac
gcgacgatcccgaagagcgagtccgtcgaggacatcgacttcgaccgggcggtcgagctg
ctggccgacaagcgcgccaaggggcccgccaagcccaaggcgaaggcgaaggccccggcg
aaggcgaaggccaaggcgcccgccaaggcgaaggccccggccaagccgggcgccgccgcg
aaggcgacgggaacgacggccgccgccacgaaggctgcggcgacgagggccgccaacaag
gcggccgctgccgcggcgaccgcgtccgacgcgacgtga
DBGET
integrated database retrieval system
