Clavibacter sepedonicus: CMS0345
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Entry
CMS0345 CDS
T00678
Name
(GenBank) putative hydrolase (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cms
Clavibacter sepedonicus
Pathway
cms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMS0345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cms03019
]
CMS0345
Messenger RNA biogenesis [BR:
cms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CMS0345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
YicC-like_C
ODP
Motif
Other DBs
NCBI-ProteinID:
CAQ00466
UniProt:
B0RBR5
LinkDB
All DBs
Position
complement(375787..377481)
Genome browser
AA seq
564 aa
AA seq
DB search
MPPTSHAHALDIAKPGRLPRGGLRVTPLGGLGDVGRNMTLFEYEGELLIVDCGVLFPEES
QPGINVILPDFSTLRGRLDKITGIVLTHGHEDHIGGVPYLLQERPDIPVIGSRLTLAFIS
AKLEEHKIKPVTRQVKEGDRIDAGKFNLEFVAVNHSIPDGLAVAIRTGAGMVLHTGDFKM
DQFPMDRRLTDLGAFARLGEEGVDLFLTDSTNAEVPGFTTAEKDLTPAIEKVFRTAPKRI
VVSSFASHVHRIQQVLDSAEQYGRKVSFVGRSMVRNMKIASDLGYLRIPKGLVIDLKALN
KLPDDKVTLICTGSQGEPMAALSRMARREHIIEVGEGDTILLASSLIPGNENAIYGVING
LIRWGADVVHKGNAKVHVSGHASAGELVYCYNLVKPRNVLPVHGEWRHLVANAALAESTG
VKNALVIEDGVSVDLVNGRASISGRVPAPYVFVDGMTIGVATEEALEERRTLAAEGQITV
LGIFDEKEQKLIHPAELITRGFVEHEGWIPEAEAAISTALKNAAAKRHLDGVAAERAMSD
GLQRWLQRRHRRTPVVTVIVVDAD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccacgtcccacgcccacgccctcgacatcgccaagcccgggcgcctgccccgc
ggcggcctgcgggtcacgcccctcggcggcctcggcgacgtcggccgcaacatgacgctg
ttcgagtacgagggcgagctgctcatcgtcgactgcggcgtgctcttccccgaggagagc
cagcccggcatcaacgtgatcctccccgacttcagcaccctgcgcgggcgcctcgacaag
atcacgggcatcgtcctcacgcacggccacgaggaccacatcggcggcgtcccctacctc
ctgcaggagcggcccgacatccccgtcatcggatcccgcctcacgctcgcgttcatcagc
gcgaagctcgaggagcacaagatcaagcccgtcacccgccaggtgaaggagggcgaccgc
atcgacgccggcaagttcaacctcgagttcgtcgccgtgaaccactccatccccgacggc
ctcgccgtcgcgatccgcacgggcgccggcatggtcctgcacacgggcgacttcaagatg
gaccagttcccgatggaccgccgcctcaccgacctcggcgcgttcgcgcgcctcggcgag
gagggcgtggacctcttcctcaccgactccacgaacgcggaggtccccggcttcacgacc
gccgagaaggacctcacgcccgccatcgagaaggtgttccgcacggcgcccaagcgcatc
gtcgtctccagcttcgcgagccacgtgcaccggatccagcaggtgctcgactccgccgag
cagtacggccgcaaggtctcgttcgtaggccgctcgatggtgcggaacatgaagatcgcg
tccgacctcggctacctccgcatccccaagggcctcgtcatcgacctgaaggcgctgaac
aagctgccggacgacaaggtcacgctcatctgcaccggttcgcagggcgagccgatggcg
gcgctcagccgcatggcgcgccgcgagcacatcatcgaggtgggcgagggcgacacgatc
ctcctggccagctcgctcatccccggcaacgagaacgccatctacggcgtgatcaacggc
ctgatccgctggggcgccgacgtcgtgcacaagggcaacgcgaaggtgcacgtctccggc
cacgccagcgccggcgagctcgtctactgctacaacctcgtcaagccccgcaacgtgctg
cccgtgcacggcgagtggcgccacctcgtcgccaacgccgccctggccgagagcacgggc
gtgaagaacgcgctcgtcatcgaggacggcgtgagcgtcgatctcgtgaacggccgcgcc
tcgatctccggccgggtccccgcgccctacgtgttcgtcgacggcatgaccatcggcgtc
gccaccgaggaggcgctcgaggagcgccgcacgctggccgccgaggggcagatcaccgtg
ctcggcatcttcgacgagaaggagcagaagctcatccacccggccgagctcatcacgcgc
ggcttcgtcgagcacgagggctggatcccggaggccgaggccgccatcagcaccgccctc
aagaacgcggccgccaagcgccacctcgacggcgtcgccgccgagcgcgccatgagcgac
ggcctgcagcgctggctccagcgccgccaccgccgcacgccggtggtcacggtcatcgtg
gtggacgcggactag
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