Clavibacter sepedonicus: CMS0403
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Entry
CMS0403 CDS
T00678
Name
(GenBank) putative sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
cms
Clavibacter sepedonicus
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cms03021
]
CMS0403
Transcription machinery [BR:
cms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CMS0403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
KORA
MarR_2
HTH_23
HTH_Crp_2
MarR
HTH_3
YdaS_toxin
UPF0122
HTH_37
DUF7343
Motif
Other DBs
NCBI-ProteinID:
CAQ00524
UniProt:
B0RBX2
LinkDB
All DBs
Position
complement(436514..437527)
Genome browser
AA seq
337 aa
AA seq
DB search
MTGTLRPRALAAAPPASRGSASRAPASAIPLATPRPRTPPLAPEATPEPAPDLTAARDEK
RRVTHDRFVRAAAAAEDPAGEAERRRLHDQIVLDHLELADQLARQHSGRAHDWSDLRQVG
YLGLVKAARRYDPGFGAPFVSFAIPTISGEIKRHLRDNGWMVRPPRQIQELRHALLAVVP
ALTQRLGRTPTDAELAAHTGHPREEVMEALAAHSSLRPASLDHTVHEHEGISLADTLGAD
DPGYARAERTVLLDAARGVLSERDRRILHLRFVDECSQSEIAAELGVTQMQVSRLLARIL
GALRAELTRGEAEALPEVAPLAAVSPIRPSGVDRRTA
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggaacgctgcgcccgcgcgccctcgccgccgccccgcccgcctcgcgcggatcc
gcctcccgcgcacctgcatcggcgatcccgctggccacgccgcgcccccgcacgccgccg
ctcgcgcccgaggcgacgcccgagcccgcacccgacctcacggcagcgcgcgacgagaag
cgccgcgtgacgcacgaccggttcgtgcgcgccgccgctgcggccgaggaccccgcgggc
gaggccgagcgccgccgcctgcacgaccagatcgtgctcgaccacctcgagctcgccgac
cagctcgcccgccagcactcgggccgcgcccacgactggagcgacctccgccaggtcggc
tacctcgggctcgtgaaggccgcgcgccgctacgaccccggcttcggcgcgccgttcgtg
tcgttcgcgatccccaccatctccggcgagatcaagcgccacctgcgcgacaacgggtgg
atggtgcgtccgccccgccagatccaggagctgcggcacgcgctgctcgcggtcgtgccc
gcgctcacccagcggctcggccgcacgcccaccgacgccgagctcgccgcgcacaccggg
catccccgcgaggaggtcatggaggcgctcgccgcgcactccagcctgcggcccgcgtcc
ctcgaccacacggtgcacgagcacgagggcatctcgctcgcggacaccctcggcgccgac
gaccccggctatgcacgcgccgagcgcacggtgctgttggacgccgcgcgcggggtgctc
agcgaacgcgaccggcggatcctgcacctgcgcttcgtcgacgagtgcagccagagcgag
atcgcggccgagctcggcgtgacgcagatgcaggtctcgcggctgctcgcgcggatcctc
ggggcgttgcgcgccgagctgacccgcggcgaggccgaggccctgcccgaggtggcgccc
ctggccgccgtgtcgccgatccggccgagcggggtcgaccgccggacggcctga
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