KEGG   Clavibacter sepedonicus: CMS0406
Entry
CMS0406           CDS       T00678                                 
Name
(GenBank) putative ATP-dependent DNA helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
cms  Clavibacter sepedonicus
Brite
KEGG Orthology (KO) [BR:cms00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cms03400]
    CMS0406
Enzymes [BR:cms01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CMS0406
    5.6.2.6  RNA 3'-5' helicase
     CMS0406
DNA repair and recombination proteins [BR:cms03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    CMS0406
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH3_Lhr WH2_Lhr WH4_Lhr DEAD Helicase_C ResIII AAA_25 DUF6406 Cas3-like_C_2 AAA_22
Other DBs
NCBI-ProteinID: CAQ00527
UniProt: B0RBX5
LinkDB
Position
complement(440240..445843)
AA seq 1867 aa
MGRPAAPHAHPHPHRRGHRDRSAAGSRRRPLVGPHRRARRSSAAGAAARIRIARGRPVRA
VAVPAARAGRRVAARAHRAAGRPRVVPDRARIDRRPGSRRRRRRRAGRARLARRAARDPA
LGGAPRVQPGRRHRAPAAAARARALRVRGAAQRVLGARRARRRRGARGRTDPGVLGPRHG
RPGDPGGGRRAHGRVDRRPHRPHGAHLRGPAALGLRGRAAGCVGVHPGARGLIRGAARPA
VLRRAPCERPTRRVVGGPEEDEQMDPVLARFSPATREWFQGAFPGPTAAQTGAWEAVQKG
SHALVVAPTGSGKTLAAFLWSIDRLASRPAPEDPMRRTRVLYISPLKALAVDVERNLRSP
LVGIVQTAKRLGAEPPEVTVGVRSGDTPAADRRSLAKTPPDILITTPESLFLMLTSAARE
TLAGVETVIVDEVHAVAATKRGSHLALSLERLDALLEKPAQRIGLSATVRPPEEVARFLG
GRSPVSIVSPKNTKEFNLRVIVPVDDMTELGTTAPLEGSAAQGDQPQQGSIWPHVEEGIV
DLVLQHTSSIVFTNSRRLAERLTARLNEIYAVRIEEGRIDAEGRVVAASDAVPVLAGAAA
GSGAGPGSARSTDFSATRRTAPRPPAELMAQAGSMEGADPVLAKAHHGFVSKEQRARIED
DLKSGRLRCVVATSSLELGIDMGDVDLVVQVEAPPSVASGLQRVGRAGHQVGEVSRGVIF
PKHRADLIHSAVAAERMASGQIESLRVPANPLDVLAQQTVAAVALEPLGVEEWFDIVRGS
APFATLPRSAYEATLDLLSGRYPSDEFAELRPRIVWDRDEGTIEGRPGAQRLAVTSGGTI
PDRGLFGVFMVGEKASRVGELDEEMVYESRVGDVFALGATSWRIQEITHDRVLVTPAFGE
PGKLPFWKGDGLGRPLELGRAIGAFVRELSGSAVDDARARAGRVGLDDRAVNNLLAFLDD
QKKATGHVPNDRTLVVERFRDELGDWRVVLHSPYGMQVHAPWALAVGARVTELYGIDGAT
MANDDGIVVRIPETDGEPPGADLFVFEPDELDAIVTREVGGSALFASRFRECAARALLLP
RYNPGRRSPLWQQRQRASQLLDVARKFPAFPIVLETVREVLQDVYDLPALTSLAKDIEAR
RIKIVETTTEDASPFARSLLFSYVGAFMYEGDSPLAERRAAALSLDAGLLSELLGRAELR
ELLDPAVIARTELELQRTAPDRRAKGLEGVADLLRILGPLDAEEVAVRLEPEEAGSAADH
LDALVAGKRALRVSFGGQPRVAAIEDASRLRDALGVPLPIGTPLAFVEPVADPLGDLVGR
YARTHGPFTIADAATGIGLGSAVIADTLARLGAQRRVVEGEFRPGASGSEWCDVEVLRRL
RSRSLAALRSEVEPVEQAAFARFLPAWQHVAGADRERGLRGVDGVLQVIEQLAGAPVPAS
AWETLVLPARVRDYTPAMLDELTSTGEVIWSGAGTLAGADGWVSLHLADQVALTLPEPDA
HDTDELQREILTTLGTGGGYFFRQLSDAVGSTDDKALVTALWDLVWAGLVTNDTLSPLRA
LLAGGSTAHKTPQRAPRGRMYRGGRMPRPDMPTRTGPPTAAGRWSIVPLAETDATVRAAG
TAELLLERYGVVTRGSVMTERVPGGFALTYKVLAGFEDTGRARRGYFIETLGAAQFSTGG
TVDRLRGFTRDPDAGGRPLNALTLAATDPANAYGAALPWPRLDGSSPDADGGTGAGVGME
ATDTEATGDTGADGASTAIAESGSVDARGERPTGHRAGRKAGALVVLVDGALVLYVERGS
KTVLRFDDDEAVIRAAAESLGQIVRRGGVAKLAIEKVNGAFILGTPLGTALQEHGFSATP
RGLRMRS
NT seq 5604 nt   +upstreamnt  +downstreamnt
atgggccgcccggccgccccgcacgcgcacccgcacccgcaccgaagaggacaccgtgac
cgctctgccgctggatcccgacgccgtcctctggtcggcccccaccgccgagctcgccga
tcgtccgctgctggtgctgctgcacggatacggatcgcacgagggcgacctgttcgggct
gtcgccgtacctgccgctcgcgccggtcgtcgcgtcgctgcgcgcgcccatcgcgctgca
gggcggccacgcgtggttcccgatcgtgcccggatcgaccggcgacccggatcccgacgc
cgccgacgccgccgcgcagggcgtgctcgactggctcgacgcgctgcccgcgaccccgcg
ctcggtggggctcctcgggttcagccagggcggcgccaccgcgctccagctgctgcggct
cgcgcccgggcgcttcgcgtacgcggtgcagctcagcgggttctcggtgcgcggcgagca
cgacggcgacgcggcgctcgcggccgcaccgaccccggtgttctggggccgcggcacggc
cgaccaggtgatcccggaggcggccgtcgcgcgcacggccgcgtggatcggcgaccacac
cgccctcacggagcgcatctacgaggacctgccgcactcggtctccgcggccgagctgcg
ggatgtgtcggcgttcatccgggagcacgcgggctgatccgcggcgccgcccggcctgcc
gtcctccggcgagcgccgtgcgagcgcccgacccggcgcgttgtcggtggtccggaggag
gatgagcagatggatcccgtcctcgcgcgcttctccccggccacccgggagtggttccag
ggcgcgttccccggccccacggccgcgcagaccggcgcgtgggaggccgtgcagaagggg
tcgcacgcgctcgtcgtggcgcccaccggatccggcaagacgctcgcggcgttcctgtgg
tccatcgaccggctggcgtcgcggccggcaccggaggacccgatgcgacgcacgcgcgtc
ctctacatctcgccactgaaggcgctcgcggtcgacgtggagcggaacctccgctcgccg
ctcgtgggcatcgtgcagacggcgaagcggctgggggccgagccgcccgaggtcaccgtc
ggcgtgcgctccggcgacaccccggcggccgaccggcgctcgctcgcgaagacgccgccg
gacatcctcatcaccacgcccgagtcgctgttcctcatgctcacgtcggccgcgcgcgag
acgctcgcgggggtcgagacggtcatcgtcgacgaggtgcacgcggtcgcggccaccaag
cgcggcagccacctcgcgctgtcgctcgagcggctcgacgcgctgctggagaagccggcg
cagcggatcgggctgtccgccaccgtgcggccgcccgaggaggtcgcgcggttcctcggc
gggcgctcgcccgtctccatcgtgtcgccgaagaacacgaaggagttcaacctgcgggtc
atcgtgccggtcgacgacatgaccgagctcggcaccacggcgccgctcgaggggtcggcg
gcgcagggcgaccagccgcagcaggggtccatctggccgcacgtggaggagggcatcgtc
gacctcgtgctccagcacacgtcgtcgatcgtcttcacgaacagcaggcggctggccgag
cggctcacggcgcggctcaacgagatctacgcggtgcgcatcgaggaggggcggatcgat
gcggaggggcgcgtggtcgcggcctccgacgccgtgcccgtgctcgcgggggcggccgcc
ggttccggtgccggtcccgggtcggcgcggtccacggacttctcggccacccgccgcacc
gccccgcgcccgcccgccgagctcatggcgcaggcggggagcatggagggcgcggatccc
gtgctcgccaaggcgcaccacggattcgtctcgaaggagcagcgcgcccgcatcgaggac
gacctgaagtccggccgcctccgctgcgtggtcgccacgtcgagcctcgagctcggcatc
gacatgggcgacgtcgacctggtggtgcaggtggaggcgccgccgtcggtcgcgagcggg
ctgcagcgcgtcggccgggccgggcaccaggtgggcgaggtctcgcgcggcgtcatcttc
cccaagcaccgggccgacctcatccactcggccgtcgccgccgagcgcatggcgagcggg
cagatcgagtcgctgcgcgtgcccgcgaacccgctggacgtgctcgcgcagcagaccgtc
gcggccgtcgcgctcgagccgctgggcgtcgaggagtggttcgacatcgtgcgggggagc
gcgcccttcgcgaccctgccgcgctccgcgtacgaggccacgctcgacctgctgagcggc
cgctacccgtccgacgagttcgcggagctgcgaccccgcatcgtgtgggaccgggacgag
ggcaccatcgaggggcggccgggcgcgcagcggctcgcggtcacctcgggcggcaccatc
cccgaccgcggcctcttcggcgtgttcatggtcggcgagaaggcgtcccgtgtgggcgag
ctcgacgaggagatggtctacgagtcgcgcgtcggcgacgtgttcgcgctcggggccacg
agctggcggatccaggagatcacgcatgaccgcgtgctcgtgacgcccgcgttcggcgag
cccggcaagctgccgttctggaagggcgacgggctcgggcggccgctcgagctcgggcgg
gccatcggcgcgttcgtgcgggagctgtcgggatccgccgtcgacgacgcccgggcgcgc
gccggccgcgtgggcctcgacgaccgcgcggtcaacaacctgctcgcgttcctcgacgac
cagaagaaggccaccggccacgtgccgaacgaccgcaccctcgtggtcgagcgcttccgc
gacgagctcggcgactggcgcgtggtgctgcactcgccctacgggatgcaggtgcacgcg
ccctgggcgctcgcggtcggcgcgcgggtcaccgagctgtacggcatcgacggcgccacc
atggccaacgacgacggcatcgtggtgcgcatccccgagaccgacggcgagccgccgggg
gccgacctgttcgtgttcgagcccgacgagctggatgcgatcgtcacgcgcgaggtcggc
ggatccgcgctgttcgcgtcccggttccgcgagtgcgccgcgcgcgccctcctgctgccg
cgctacaacccgggccgccgctcgccgctctggcagcagcgtcagcgcgcgtcgcagctg
ctcgacgtggcccgcaagttcccggcgttccccatcgtgctcgagaccgtgcgcgaggtg
ctgcaggacgtctacgacctgcccgcgctcacgtcgctcgcgaaggacatcgaggcccgg
cgcatcaagatcgtcgagaccaccacggaggacgcgtcgccgttcgcccgcagcctcctc
ttcagctacgtcggcgcgttcatgtacgagggcgacagcccgctcgccgagcgccgggcc
gccgcgctctcgctcgacgcggggctgctcagcgagctgctcgggcgggcggagctgcgc
gagctgctggatccggcggtcatcgcgcgcaccgagctcgagctgcagcgcacggcgccc
gaccggcgcgcgaagggcctcgagggcgtggccgacctgctgcggatcctcggcccgctc
gacgccgaggaggtcgccgtgcgcctggagcccgaggaggccgggtccgccgccgaccac
ctcgacgcgctcgtggccggcaagcgcgcgctccgcgtctcgttcggcgggcagccgcgg
gtcgccgccatcgaggacgcgagccgtctccgcgacgccctcggggtgccgctgcccatc
ggcacgccgctcgcgttcgtcgagccggtcgcggatccgctcggcgacctcgtcggccgg
tacgcccgcacgcacgggccgttcaccatcgcggacgcggccaccggcatcggcctcgga
tccgccgtcatcgccgacacgctcgcccggctcggcgcccagcggcgcgtggtcgagggc
gagttccgaccgggcgcgtctggcagcgagtggtgcgacgtcgaggtgctccggcgcctg
cggagccgctcgctcgcggcgctccgcagtgaggtcgagccggtcgagcaggccgcgttc
gcgcgcttcctccccgcgtggcagcacgtggcgggcgcggaccgcgagcgcgggctccgc
ggggtcgacggcgtgctgcaggtcatcgagcagctggccggcgcgcccgtccccgcctcc
gcgtgggagacgctcgtgctcccggcgcgcgtgcgcgactacacgccggccatgctcgac
gagctcacgtccaccggcgaggtcatctggtccggcgccggcacgctcgcgggcgccgac
gggtgggtgagcctgcacctcgccgaccaggtcgcgctcacgctgcccgagcccgacgcg
cacgacaccgacgagctgcagcgcgagatcctcacaacgctcggcacaggcggcggctac
ttcttccgtcagctgagcgacgccgtgggatccacggacgacaaggcgctcgtcaccgcg
ctgtgggacctcgtgtgggcgggcctcgtcacgaacgacacgctctcgccgctgcgggcg
ctgctcgcgggcggatccaccgcgcacaagacgccgcagcgggcaccgcgcgggcgcatg
taccggggcgggcggatgccgcggcccgacatgcccacgcgcacgggaccgccgaccgcg
gccgggcgctggtcgatcgtgccgctcgccgagaccgacgcgaccgtgcgcgccgccggc
acggccgagcttctgctggagcggtacggcgtcgtcacgcgcggatccgtcatgaccgag
cgcgtgccgggcggcttcgcgctcacgtacaaggtgctcgcgggcttcgaggacaccggg
cgcgcgcgccgcgggtacttcatcgagacgctgggggcggcgcagttctcgacgggcggc
acggtggatcggctgcgcgggttcacccgtgatcccgatgcgggcgggcggccgttgaac
gcgctgacgctcgcggccacggatccggcgaacgcgtacggggcggcgctgccctggccg
cggctcgacgggtcgtcgcccgacgcggacggcggcacgggggcgggtgtcggcatggag
gcgaccgacacggaggcgaccggcgacacgggagccgacggcgcgtccacggcgatcgcg
gagtccggcagcgtcgatgcccgcggcgaacggcccaccgggcacagggccggccggaag
gcgggcgcgctcgtggtgctggtcgacggcgccctcgtgctctacgtggagcgcggcagc
aagaccgtgctgcggttcgacgacgacgaggcggtgatccgcgcggcggccgagtcgctc
ggccagatcgtgcggcgcggcggcgtcgcgaagctcgcgatcgagaaggtgaacggcgcg
ttcatcctcggaacgccgctcggcaccgcgctccaggagcacggcttctcggcgacgccg
cgcgggctgcggatgcgctcgtga

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