Clavibacter sepedonicus: CMS1186
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Entry
CMS1186 CDS
T00678
Name
(GenBank) guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cms
Clavibacter sepedonicus
Pathway
cms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMS1186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cms03019
]
CMS1186
03016 Transfer RNA biogenesis [BR:
cms03016
]
CMS1186
Enzymes [BR:
cms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CMS1186
Messenger RNA biogenesis [BR:
cms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CMS1186
Transfer RNA biogenesis [BR:
cms03016
]
Prokaryotic type
tRNA degradation factors
CMS1186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
KH_5
Motif
Other DBs
NCBI-ProteinID:
CAQ01301
UniProt:
B0RGW7
LinkDB
All DBs
Position
1239259..1241532
Genome browser
AA seq
757 aa
AA seq
DB search
MEGPEIKFAEAVLDNGKYGTRTVRFEAGRLAQQAQGAVAAYLDEDTMLLSATSVGKHPKD
NFDFFPLTIDVEERSYAAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFITGLRNEVQ
VVITVLSIAPDEFYDSLAINAASASSMLSGIPFSGPIAGVRLALIGDQWVVFPKHSQLKE
AVFDITVAGRVVTDAQGNEDVAIMMVEAEATEGAWDLIQAGATKPDEAVVAQGLEAAKPF
IRQLVAAQASLAQQAAKPTVDYPVFLPYAQQSYDAVSALALEELGTVYRIADKIERQDAD
DALKTRTKEAVAAKVEAGELPQSALTEFSAAYKSVTKTVVRGRILRDGIRMDGRGLADIR
PLDAEVQVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLSPVTKKRFMTHYNFPPY
STGETGRVGSPKRREIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCA
STLSLLNAGVPLRAPVAGIAMGLVSDTVDGQVRYAALTDILGAEDALGDMDFKVAGTSEF
VTAIQLDTKLDGIPTSVLDGALKQAKEARTAILGVLNQAIDAPDEMAPTAPRVISVNIPV
DKIGELIGPKGKTINAIQDETGADISIEEDGAVYIGAVDGPSAEAARAQVNAIANPTNPE
VGESFLGTVVKIATFGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQKILVEI
TKIDDRGKLSLAPVMEEAADQEGSAAASDGPEAPAEG
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtccagagatcaagttcgccgaggcagtcctcgacaacggcaagtacggaacc
cgcacggtccggttcgaggccggccgcctcgcgcagcaggcgcagggcgcggtcgccgcg
tacctcgacgaggacacgatgctgctgtccgccacctcggtgggcaagcacccgaaggac
aacttcgacttcttccccctgaccatcgacgtcgaggagcgcagctacgccgcgggcaag
atccccggctcgttcttccgccgcgagggccgcccctccaccgaggcgatcctcgtctgc
cgcctcatcgaccggccgctgcgcccgtcgttcatcacgggcctccgcaacgaggtccag
gtcgtcatcaccgtcctgagcatcgcgcccgacgagttctacgacagcctcgccatcaac
gcggccagcgcctcctccatgctctcgggcatcccgttctcgggccccatcgcgggtgtg
cgcctcgcgctcatcggcgaccagtgggtcgtcttcccgaagcactcgcagctcaaggag
gccgtcttcgacatcaccgtcgccggccgcgtcgtcaccgacgcccagggcaacgaggac
gtcgcgatcatgatggtcgaggccgaggccaccgagggtgcctgggacctcatccaggcc
ggcgccaccaagcccgacgaggccgtcgtcgcgcagggcctcgaggccgcgaagccgttc
atccgccagctcgtcgctgcgcaggcctcgctcgcgcagcaggccgcgaagcccaccgtc
gactacccggtcttcctgccgtacgcgcagcagtcctacgacgcggtctccgccctcgcc
ctcgaggagctcggcaccgtgtaccggatcgccgacaagatcgagcgccaggacgccgac
gacgccctcaagacccgcaccaaggaggccgtggccgccaaggtcgaggccggcgagctg
ccgcagtcggcgctcaccgagttctcggcggcgtacaagtccgtcacgaagacggtcgtc
cgcggccggatcctccgcgacggcatccgcatggacggtcgcggcctcgccgacatccgc
ccgctcgacgccgaggtgcaggtcatcccgcgcgtccacggctcggccatcttccagcgc
ggcgagactcagatcctgggcgtcaccacgctgaacatgctcaagatggagcagcagatc
gactcgctgagccccgtcaccaagaagcgctttatgacccactacaacttcccgccgtac
tccaccggcgagaccggtcgcgtcgggtcgccgaagcgtcgcgagatcgggcacggcttc
ctggccgagcgcgccctcgtgccggtgctgccgagccgcgaggacttcccctacgcgatc
cgccaggtgtccgaggccctcgggtccaacggctccacctcgatgggctccgtctgcgcc
tcgaccctgtcgctgctgaacgcgggtgtgccgctgcgcgcgcccgtcgccggcatcgcc
atgggcctcgtttccgacaccgtcgacggccaggtccgctacgcggccctcaccgacatc
ctcggtgcggaggacgcgctcggcgacatggacttcaaggtcgccggcacgtcggagttc
gtcacggccatccagctggacacgaagctcgacggcatcccgacgtcggtcctcgacggt
gcgctcaagcaggcgaaggaggcccgcacggcgatcctcggcgtgctgaaccaggccatc
gacgcccccgacgagatggccccgaccgcgccccgcgtgatctcggtcaacatccccgtc
gacaagatcggcgagctcatcggccccaagggcaagacgatcaacgccatccaggacgag
accggcgccgacatctccatcgaggaggacggcgccgtgtacatcggcgccgtcgacggc
ccgtcggcggaggccgcgcgtgcgcaggtcaacgccatcgcgaacccgacgaaccccgag
gtcggcgagtccttcctcggcaccgtcgtcaagatcgcgacgttcggcgcgttcgtctcg
ctgctccccggcaaggacggcctgctgcacatcagcgaggtccgcaagctcgccggcggc
aagcgcgtcgagaacgtggaggacgtgctcggcgtcggccagaagatcctggtggagatc
accaagatcgacgaccgcggcaagctgtccctcgctcccgtgatggaggaggccgccgat
caggagggctccgccgccgcgagcgacggccccgaggcccccgcggagggctag
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