Clavibacter sepedonicus: CMS1382
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Entry
CMS1382 CDS
T00678
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha chain
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cms
Clavibacter sepedonicus
Pathway
cms03030
DNA replication
cms03430
Mismatch repair
cms03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CMS1382 (dnaE)
03430 Mismatch repair
CMS1382 (dnaE)
03440 Homologous recombination
CMS1382 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cms03032
]
CMS1382 (dnaE)
03400 DNA repair and recombination proteins [BR:
cms03400
]
CMS1382 (dnaE)
Enzymes [BR:
cms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CMS1382 (dnaE)
DNA replication proteins [BR:
cms03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CMS1382 (dnaE)
DNA repair and recombination proteins [BR:
cms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CMS1382 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
HROB
Motif
Other DBs
NCBI-ProteinID:
CAQ01493
UniProt:
B0RIK2
LinkDB
All DBs
Position
1450787..1454299
Genome browser
AA seq
1170 aa
AA seq
DB search
MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQGMPAVAITDHGNVFGAFDFWKQAKA
AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL
SSRASLEGYYFKPRMDRELLSTYAKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFRDI
FGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLCVQ
SGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYMPR
YPVPEGESEQTWFVKEVERGLVRRYPRGFSDDVRKRADYEVGVIAQMGFPGYFLVVADFI
NWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDRVSMPDFDVDFDD
RRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMGDKLTKAMPPAIM
GKDIPLSGILDTEHPRYREAGDFREVLAMDPEAQKVFETAQGIENLKRQWGVHAAGVIMS
SEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIIDDALNNIESNRGE
KLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNFEDISAVIALYRPGP
MGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQVMSVAQKLAGFTLA
QADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILLPFSDYAFNKAHSAA
YGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKVLPPDVNESIGFF
AAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVPLPVANKRTVESLIK
AGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWDEPQHARKVPERPEW
AKRDKLAFEREMLGLYVSDHPLAGLEIPLAKLASTGIAELLATDASMDGETVTLAGLLTS
VQHRTARNSGNQYGMVQLEDFGGEITCMFMGKAYQEFAPALQSDTVVVIRGRVSTRDDGM
NIHAFSMFQPDLGQSLGSGPLLISLAENRATTETVMGLNDVLIRHSGDTEVRLQLVKGDS
GRVFEIPYPVTVSADLYGELKSLLGPNCLG
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgccccgcaacgactcgttcgtccacctccacgtccacagcgagtactccatgctcgac
ggggcggcccgcgtcggcccgctcgtgcaggcagcggccgagcaggggatgccggccgtc
gcgatcaccgaccacggcaacgtgttcggcgcgttcgacttctggaagcaggcgaaggcc
gcgggcgtcaagcccatcatcggcaccgaggcgtacatcacaccgggcacccaccgcggc
gaccgcacccgcatccggtggggcaatggcggccaggatgacgtctccggatccggcgcg
tacacgcacctgacgatgctcgccgagacgaccgagggcatgcacaacctgttccggctc
tcgtcgcgcgcctcgctcgagggctactacttcaagccccgcatggaccgggagctcctc
agtacctacgccaagggcctcatcgccaccaccggctgcccgtccggcgaggtgcagacg
cgcctccggctcggccagtacgacgaggccgtgaaggccgccgcggacttccgcgacatc
ttcggggccgagaactacttctgcgaggtcatggaccacgggctcggcatcgagcgccgc
atcatgaccgacctccaccgcctggcgaaggacctcggcctcccgctcgtcgccaccaac
gacctgcactacacgcacgagcacgacgcgacgagccacgcggcgctcctctgcgtccag
tccggcacgacgctcgacgaccccaaccgcttcaagttcgacgccgacgagttctacctg
aagaccgcgcagcagatgcgccacctcttccgcgaccacgaggaggcgtgcgacaacacg
ctcctcatcgccgagcggtgcgacgtccagttcaacgagtccgccaactacatgccgcgc
taccccgtgcccgagggcgagagcgagcagacctggttcgtcaaggaggtcgagcgcggc
ctcgtcaggcgctacccgcgcggcttctccgacgacgtgcgcaagcgtgccgactacgag
gtcggggtcatcgcgcagatgggattcccgggctacttcctcgtcgtcgcggacttcatc
aactggtcgaaggagaacgggatccgcgtgggccccggccgcggatccggcgccggctcg
atggtcgcgtacgccatgggcatcaccgacctcgacccgctggagcacggcctgctgttc
gagcggttcctcaaccccgaccgcgtctccatgcccgacttcgacgtcgacttcgacgac
cgtcgccgcggcgaggtcatccgctacgtgaccgacaagtacggcgacgagcgcgtggcg
cagatcgtcacgtacggcaccatcaaggcgaagcaggcgctgaaggactcgagccgcgtg
ctcggctacccgttctccatgggcgacaagctcaccaaggccatgccgcccgcgatcatg
ggcaaggacatcccgctgtccggcatcctcgacaccgagcacccgcgctaccgcgaggcc
ggcgacttccgcgaggtgctcgcgatggacccggaggcgcagaaggtcttcgagaccgcg
caggggatcgagaacctcaagcgccagtggggcgtgcacgcggccggcgtcatcatgtcg
agcgagccgctcatcgacatcatcccgatcatgaagcgggagcaggacggccagatcgtc
acgcagttcgactaccccgcgtgcgagtcgctcggcctcatcaagatggacttcctgggg
ctgcgcaacctcacgatcatcgacgacgcgctcaacaacatcgagtcgaaccgcggcgag
aagctcgtgctcgaggacctgggcctcgacgaccagggggcgtacgacctgctcgcccgc
ggcgacaccctcggcgtcttccagctcgacggcggtcccatgcgctcgctcctgcgcatg
atgaagcccgacaacttcgaggacatctcggccgtcatcgcgctctaccgccccggcccc
atgggcgcgaactcgcacacgaactacgcgctgcggaagaacgggctgcaggagatcacc
ccgatccacccggagctcgaggagccgctgcgcgaggtgctcggcaccacgcacggcctc
atcgtgtaccaggagcaggtcatgtcggtggcgcagaagctcgcgggcttcacgctcgcg
caggccgacctcctgcggcgcgcgatgggcaagaagaagaagtccgagctcgacaagcag
ttcgagggcttctcgcagggcatgaaggacaacggctactcgatggccgcggtgaaggcg
ctctgggacatcctgctgccgttctccgactacgccttcaacaaggcgcactccgcggcg
tacggcgtcgtctcctactggaccgcctacctcaaggcccattacccggccgagtacatg
gcggcgctgctcacgagcgtcggcgactccaaggacaagatggcgctgtacctcaacgag
tgccgccgcatggggatcaaggtcctcccgccggacgtcaacgagtcgatcggcttcttc
gcggcggccggggccgacatccgcttcgggctgggcgctgtgcgcaacgtcggcgcgaac
gtggtcgaggcgctccgcggcgcccgcaccgagcagggcgcattcgagtcgttcgacgac
ttcctcaagaaggtcccgctgccggtcgccaacaagcggacggtcgagtcgctcatcaag
gccggcgcgttcgactcgctgggcgacacccgccgggcgctgctcgaggtgcacgagggc
atgatcgacgcctccgtcagcgacaagcgcgcggccatgaacgggcaggtcggcttcgac
ttcgacagcctctgggacgagccgcagcacgcgcgcaaggtgcccgagcggcccgagtgg
gcgaagcgcgacaagctcgcgttcgagcgcgagatgctcggcctctacgtctccgaccac
ccgctcgcggggctcgagatcccgctggcgaagctcgcctcgacgggcatcgccgagctg
ctggcgacggacgcgtcgatggacggggagacggtcacgctggccgggctcctcacgagc
gtccagcaccgcaccgcgcggaactcgggcaaccagtacggcatggtgcagctcgaggac
ttcggcggcgagatcacctgcatgttcatgggcaaggcgtaccaggagttcgcgcccgcc
ctccagagcgacaccgtcgtggtgatccgcggccgggtctccacgcgcgacgacggcatg
aacatccacgcgttctcgatgttccagcccgacctcgggcagagcctcggctccgggccc
ctcctcatcagcctcgcggagaaccgggcgaccacggagaccgtcatgggtctcaacgac
gtgctcatccgccactcgggcgacaccgaggtgcggctccagctcgtgaagggcgacagc
gggcgggtgttcgagatcccgtacccggtcacggtgagcgcggacctctacggcgagctc
aagtcgctgctcgggccgaactgcctggggtga
DBGET
integrated database retrieval system
