Clavibacter sepedonicus: CMS1481
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Entry
CMS1481 CDS
T00678
Symbol
rho
Name
(GenBank) putative transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
cms
Clavibacter sepedonicus
Pathway
cms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMS1481 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cms03021
]
CMS1481 (rho)
03019 Messenger RNA biogenesis [BR:
cms03019
]
CMS1481 (rho)
Transcription machinery [BR:
cms03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CMS1481 (rho)
Messenger RNA biogenesis [BR:
cms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CMS1481 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
NACHT
SAP
Motif
Other DBs
NCBI-ProteinID:
CAQ01592
UniProt:
B0RAQ4
LinkDB
All DBs
Position
1553994..1556543
Genome browser
AA seq
849 aa
AA seq
DB search
MTDVDTRATTADLNALRATTADLNALRVSQLQAIASELGIPGGSKLRKGELVTAISEIQA
ARGITAPAAETAPEATAPAEAGDAAPAAVEPSEPSAPVEEAPASEPVVADADAAPAAAAA
PAADTTPADTTPAEAPAADAPAEQPARAGRGSRRASTARIVPERIAETIEAPAAEPAGTG
LEARIAEATSGSAPAATQAPRTEAPARSGRGSRRATSSGVVDPAAEAPRQAAQHVNSGQT
ADQLVPADAQANPQAPAADASAAADAPAEEQAPAQRSGRGRRRGGRDAQDGADRGAAQDA
PATPDADETPAASEPADRQRDDRQRDDRDADDQGGRRDDQGREGREGGRNRSRNRRNRDR
GRDQDDQQQNGRDQAPREQAPREPDADDEAQEEARTGRQRQNSRGQGDRQQDVRADQARA
DLGRDDDRGGRSRYRDRKRGRGQGGDDFEPEVTEDDVLLPVAGILDVLDNYAFVRTSGYL
PGTNDVYVSLGQVKKHSLRKGDAIVGAIRQPRDNDSQSRQKYNAIVKIDSVNGLPPEEAA
NRVEFGKLTPLYPQDRLSLETEPAKLTTRIIDLVSPIGKGQRGLIVSPPKAGKTLVLQAI
ANAIATNNPEVHLMVVLVDERPEEVTDMQRTVKGEVIASTFDRPAEDHTTVAELAIERAK
RLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSSALYPPKRFFGAARNIEHGG
SLTILATALVETGSKMDEVIFEEFKGTGNMELRLSRALADKRIFPAVDVNASGTRREEML
MGADEVKVTWKLRRALAGLEQQQALEIVLSRLKETTSNVEFLMKVQASMPNTGNGVSHQS
HGHGAHEKG
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtcgacacccgcgccaccaccgcggacctgaacgcgctccgcgccaccacc
gcggacctgaacgcgctccgcgtctcccagctccaggccatcgcctccgagctcgggatc
ccgggcggctccaagctccggaagggcgagctcgtgaccgcgatctccgagatccaggca
gcacggggcatcaccgccccggcggccgagacggcccccgaggccaccgcgcccgccgag
gccggcgacgcggcccccgcagccgtggagccctccgagccctccgcgcccgtcgaggag
gcccccgcctcggagcccgtcgtcgccgacgccgacgccgccccggccgcggccgccgcg
cccgccgcggacacgacccccgcggacacgacccccgccgaggcccccgccgccgacgcc
ccggccgagcagcccgcgcgcgccggccgcggctcccgccgcgccagcaccgcccgcatc
gtgcccgagcgcatcgccgagaccatcgaggcgcccgccgcggagcccgctggcaccggc
ctggaggcccgcatcgccgaggcgacgagcggcagcgcgccggccgccacgcaggcgccc
cggaccgaggcgcccgcgcgctccggccgcggatcccgccgtgccacgagctccggcgtc
gtggaccccgcggccgaggccccgcgccaggccgcgcagcacgtgaacagcggccagacg
gccgaccagctcgtccccgccgacgcgcaggccaacccgcaggcgcccgccgccgacgcg
tccgctgccgccgacgcgcccgccgaggagcaggcccccgcgcagcgctccggccgcggc
cgccgccgcggcggacgcgacgcccaggacggcgccgaccgcggcgccgcgcaggacgca
cctgccaccccggacgccgacgagacccccgccgcgtccgagccggccgaccgccagcgc
gacgaccgccagcgcgacgaccgcgacgccgacgaccagggcggacgccgcgacgaccag
ggccgcgagggtcgcgagggcggccgcaaccgcagccgcaaccgccgcaaccgcgaccgc
ggacgcgaccaggacgaccagcagcagaacggccgcgaccaggccccgcgcgagcaggcc
ccccgcgagcccgacgccgacgacgaggcgcaggaggaggcccgcacgggtcgccagcgc
cagaacagccgcggccagggcgaccgccagcaggacgtgcgcgccgaccaggcccgcgcc
gacctcggccgcgacgacgaccgcggcggccgcagccggtaccgcgaccgcaagcgcggc
cgcggccagggcggcgacgacttcgagcctgaggtcaccgaggacgacgtcctcctgccc
gtcgcgggcatcctcgacgtgctcgacaattacgcgttcgtccgcacgagcggctacctg
cccggcacgaacgacgtctacgtctccctcggccaggtcaagaagcactcgctgcgcaag
ggcgacgccatcgtcggcgccatccgccagccgcgcgacaacgacagccagagccgccag
aagtacaacgcgatcgtgaagatcgactcggtcaacggcctgccgcccgaggaggccgcg
aaccgcgtcgagttcggcaagctcacgccgctgtacccgcaggaccgcctcagcctcgag
accgagcccgcgaagctcaccacgcggatcatcgacctcgtgtcgccgatcggcaagggc
cagcgcggcctcatcgtctcgccgcccaaggccggcaagacgctcgtgctccaggccatc
gcgaacgccatcgccaccaacaaccccgaggtccacctcatggtcgtgctggtcgacgag
cgtcccgaggaggtcaccgacatgcagcgcacggtgaagggcgaggtcatcgcctccacc
ttcgaccgtcccgccgaggaccacaccacggtcgccgagctcgccatcgagcgcgccaag
cgcctcgtggagctcggccacgacgtggtcgtgctgctcgactccatcacccgcctcggc
cgcgcgtacaacctcgcggcacccgcgtcgggccggatcctctcgggcggcgtcgactcg
tcggcgctctacccgccgaagcgcttcttcggcgccgcgcgcaacatcgagcacggcgga
tcgctcacgatcctcgccacggcgctcgtggagaccggatccaagatggacgaggtcatc
ttcgaggagttcaagggcaccggcaacatggagctccgcctctcgcgcgccctcgccgac
aagcggatcttccccgccgtcgacgtcaacgcctccggcacgcgccgcgaggagatgctc
atgggcgccgacgaggtcaaggtcacctggaagctgcgccgcgccctcgccgggctcgag
cagcagcaggccctcgagatcgtcctcagccgcctgaaggagacgacgtccaacgtcgag
ttcctgatgaaggtccaggcctccatgcccaacaccggcaacggcgtgtcccaccagagc
cacgggcacggcgcgcacgagaagggctga
DBGET
integrated database retrieval system
