Clavibacter sepedonicus: CMS1818
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Entry
CMS1818 CDS
T00678
Name
(GenBank) putative ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cms
Clavibacter sepedonicus
Pathway
cms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMS1818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cms03019
]
CMS1818
03009 Ribosome biogenesis [BR:
cms03009
]
CMS1818
Enzymes [BR:
cms01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CMS1818
Messenger RNA biogenesis [BR:
cms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CMS1818
Ribosome biogenesis [BR:
cms03009
]
Prokaryotic type
rRNA processing factors
CMS1818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
CAQ01923
UniProt:
B0RDG7
LinkDB
All DBs
Position
complement(1919552..1922599)
Genome browser
AA seq
1015 aa
AA seq
DB search
MVERDENTGRRRPSLFERLTGRRAEPTAATGTGGTPALPATATPEASGTSAASEAKGHTL
NENDDTQSMPDEMEAPVVRRSRRASTAASAPAVAQPDDASVDASASAPASTDDADTEAPA
APAARAPRKRAPRKAAVAADVEQDAPVSGIPDPDVGIPDAAVAEPAVDEPAATEPVVEAP
AAPARTVPSLSVFFQAPDIAPLPPRRERDDRRDDRRDDARDEDDDLDLDRDERPSRSPRR
GGRGQDRGQERSTGRDGRGRDTRDDDHDDEDDSPSVRRRARRRSGEEGRDGDDAPGTVVK
VRTPREPELITEPQRIKGSTRLEAKKQRRRDGRDAGRRRPVLTESEYLARRESVDRSMIV
RSRDGKIQIGVLEDQVLVEHYVARADEASLIGNVYLGRVQNVLPSMEAAFIDIGRGRNAV
LYSGEVDWEAANADKGGGSHARRIEVALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRY
LVYVPNGSMNGISRKLPDTERARLKKTLKEVLPENVGVIVRTAAEGATEEQLKLDVERLT
SQWAEISRQVEKAQAPALLHSEPDLLLKIIRDVFNEDFRELVIDGGDAQEIIEGYLRGVA
PDLIDRVQAYSGEKDSFDHYRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKF
VGSGGNLEETVTKNNLEAAEEIVRQMRLRDIGGIIVVDFIDMVLETNRDLVLRRLVECLS
RDRTKHQVAEVTSLGLVQMTRKKLGLGLLESFSENCETCAGRGIIIHHDPLMAHKQTPQE
PVQGQGRRRGGKGQQEHGTGGGNGNGGGRGNGGGQAQQQQRTPAASTHSITEDARSALAK
IATSTIQTVNEAIDRVEDVVRTPDETTEAAAPAEGAPVAEQPRGDRPRRSRGGRGRASSV
VADATEQQPPQAPVAEDPSAPAEDPTPADAPVEESARSTLEPREAIRLEPVQILDIPVAS
ARTAPRRVSSADAEQLLGSVLDALPQPKEPGQGRSRSRRVSTPTLTTPSPTDDAS
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggtggagagagacgagaacaccggcaggaggcgtcccagcctcttcgagcggctcacg
ggccgccgcgccgagccgaccgcggcgacggggaccggcggcacgcccgccctccccgcg
accgcgacccccgaggcgagcggcacgtccgccgcctccgaagcgaagggccacaccctg
aacgagaacgacgacacccagtccatgcccgacgagatggaggcgccggtcgtccgtcgc
tcccgccgcgcgagcaccgccgcatccgcgcccgcggtcgcccagccggacgacgccagc
gtcgacgcgtccgcctcggcacccgcgtccacggacgacgccgacacggaggctcccgcg
gctcccgccgcgcgcgcaccccggaagcgcgcaccgcgcaaggccgccgtcgccgcggac
gtcgagcaggacgcgcccgtgtccggcatccccgatccggacgtcggcatccccgacgcc
gcggtcgccgagcccgcggtcgacgagcccgccgcgacggagcccgtcgtcgaggcgccc
gccgccccggcccgcaccgtgccgtccctctccgtgttcttccaggcccccgacatcgcg
ccgctgcctccccgccgcgagcgggacgaccgccgggacgaccgccgcgatgacgcgcgc
gacgaggacgacgacctcgacctcgaccgcgacgagcgcccgtcgcgctccccgcgccgc
ggcggacgcggacaggaccgcggccaggagcgcagcaccggtcgtgacggccgtggccgc
gacacccgcgacgacgaccacgacgacgaggacgactccccgtcggtccgccgccgcgcg
cgccgccgctccggcgaggagggccgcgacggcgacgacgcgcccggcacggtcgtcaag
gtccgcacgccccgcgagcccgagctcatcaccgagccgcagcgcatcaagggatccacg
cgcctcgaggccaagaagcagcgccgccgcgacggccgcgacgccggccgccgccgtccc
gtgctcaccgagtcggagtacctggcccgccgcgagtcggtcgaccgcagcatgatcgtg
cgctcgcgcgacggcaagatccagatcggcgtgctcgaggaccaggtgctcgtcgagcac
tacgtggcacgcgccgacgaggcgtccctcatcggcaacgtctacctcggccgcgtccag
aacgtgctgccgagcatggaggccgcgttcatcgacatcggccgcggccgcaacgccgtg
ctctactccggcgaggtcgactgggaggccgccaacgccgacaagggcggcggcagccac
gcgcgccgcatcgaggtcgcgctgaagcccggcgaccgcgtgctcgtccaggtcaccaag
gacccggtcggccacaagggcgcccgcctcacgagccaggtgagcctgcccggccgctac
ctcgtctacgtgcccaacgggtccatgaacggcatcagccgcaagctcccggacaccgag
cgtgcgcgcctgaagaagacgctgaaggaggtgctgcccgagaacgtgggcgtcatcgtc
cgtactgcggccgagggcgcgaccgaggagcagctgaagctcgacgtcgagcgcctcacg
tcgcagtgggccgagatcagccgccaggtcgagaaggcgcaggcgcccgcgctcctgcac
tcggagcccgacctgctgctgaagatcatccgcgacgtcttcaacgaggacttccgggag
ctcgtgatcgacggcggcgacgcccaggagatcatcgagggctacctgcgcggcgtggcg
cccgacctcatcgaccgggtgcaggcgtactcgggcgagaaggactcgttcgaccactac
cgcgtcagcgagcagatcgagaaggcgctggaccgcaaggtgtggctgccctccggcgga
tcgctcgtcatcgaccgcaccgaggccatgaccgtggtcgacgtcaacacggggaagttc
gtcggttccggcggcaacctcgaggagaccgtcaccaagaacaacctcgaggccgcggag
gagatcgtccgccagatgcgcctgcgcgacatcggcggcatcatcgtcgtcgacttcatc
gacatggtgctcgagaccaaccgcgacctcgtgctccgccgcctggtggagtgcctcagc
cgcgaccgcaccaagcaccaggtcgccgaggtcacctcgctcggtctcgtgcagatgacc
cgcaagaagctcggtctcgggctcctcgagtcgttctccgagaactgcgagacgtgcgcc
gggcgggggatcatcatccaccacgacccgctcatggcccacaagcagacgccgcaggag
cccgtgcagggccagggtcgccgtcgtggcggcaagggccagcaggagcacggcaccggc
ggcgggaacggcaacgggggcggtcgcggaaacggcggcggccaggcgcagcagcagcag
cgcacgcccgcggccagcacccacagcatcaccgaggacgcgcgctctgccctcgcgaag
atcgccacgagcaccatccagacggtgaacgaggccatcgaccgggtcgaggacgtcgtg
cgcacgccggacgagaccactgaggcggccgcgcccgccgagggcgcgccggtcgcggag
cagccgcgcggcgaccgaccgcgacggagccgagggggccggggacgtgcgtcgtccgtc
gtcgccgatgccacggagcagcagccgccgcaggcgcccgtcgccgaggacccgtccgct
cccgccgaggacccgacgccggccgacgcgcccgtcgaggagtcggcgcgatccacgctc
gagccgcgcgaagccatccgcctcgagccggtgcagatcctcgacatcccggtcgcgagc
gcccgcacggccccgcgccgcgtgagctcggccgacgcggagcagctcctcggctccgtg
ctcgacgcgctgccgcagcccaaggagcccggccaggggcgctcgcgcagccgacgggtc
tcgaccccgacgctgacgacgccgtccccgaccgacgacgcgagctga
DBGET
integrated database retrieval system
