Clavibacter sepedonicus: CMS1838
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Entry
CMS1838 CDS
T00678
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
cms
Clavibacter sepedonicus
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cms03016
]
CMS1838 (truB)
Enzymes [BR:
cms01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
CMS1838 (truB)
Transfer RNA biogenesis [BR:
cms03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CMS1838 (truB)
Prokaryotic type
CMS1838 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C
TruB_C_2
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
CAQ01943
UniProt:
B0RDY4
LinkDB
All DBs
Position
complement(1941561..1942520)
Genome browser
AA seq
319 aa
AA seq
DB search
METPTPRAAPSTASGLLLIDKRGEWTSHDLVARTRRLAGTRKVGHAGTLDPMATGLMILG
VNSSTRLLTYLVGLDKEYLATIRLGRATTTDDREGEVVSRAEPGRIRDLAVADVERAIAD
LRGTISQVPSAVSAIKVDGKRAYARVRAGEEVELAAREVTVSAFDVLRFDAVEAEEGEED
GAQLDLSVRITCSSGTYVRALARDLGRALGVGGHLTALRRTRVGPFHVDDAVAIDDMVVA
DRLIPPADAAARLFDVLHLTDQEAVDLGHGKKLTTPDEAPTEDPLAAVAPDGRLVGLVGF
RGRTGTSIVNFPADEAGAS
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccccgaccccccgtgccgctccgtccaccgcgagcggcctgctcctcatcgac
aagcgcggggagtggacgagccacgacctcgtcgcccgcacgcgccgcctcgccggcacc
cgcaaggtcgggcacgcgggcacgctcgacccgatggcgaccggcctcatgatcctcggc
gtcaacagctccacgcgcctgctcacctacctcgtcggcctcgacaaggagtacctggcg
accatccgcctcggccgcgccaccaccaccgacgaccgggagggcgaggtcgtctcgcgc
gccgagcccggccgcatccgcgacctcgccgtcgccgacgtggagcgcgccatcgcggac
ctccgcggcaccatctcgcaggtgccgagcgcagtcagcgccatcaaggtcgacggcaag
cgcgcgtacgcccgcgtccgcgccggcgaggaggtcgagctcgccgcgcgcgaggtcacg
gtgtccgcgttcgacgtgctgcgcttcgacgcggtggaggcggaggagggcgaggaggac
ggcgcgcagctcgacctctccgtgcggatcacctgctcctccggcacctacgtgcgcgcc
ctcgcgcgggacctcggccgcgcgctcggcgtcggcggccacctcacggcgctccgccgc
acgcgcgtcggccccttccacgtggacgacgccgtcgcgatcgacgacatggtggtcgcc
gaccggctgatcccgccggcggacgccgccgcgcgcctcttcgacgtgctccacctcacc
gaccaggaggccgtcgacctcgggcacggcaagaagctcacgacgcccgacgaggcgccc
acggaggatccgctcgcagcggtcgcgcccgacggccggctcgtggggctggtcggcttc
cgcggccgcacgggcacgtccatcgtcaacttcccggcggacgaggcgggcgcgtcgtga
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