Clavibacter sepedonicus: CMS1860
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Entry
CMS1860 CDS
T00678
Symbol
deaD
Name
(GenBank) cold-shock DEAD-box RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cms
Clavibacter sepedonicus
Pathway
cms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMS1860 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cms03019
]
CMS1860 (deaD)
03009 Ribosome biogenesis [BR:
cms03009
]
CMS1860 (deaD)
Enzymes [BR:
cms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CMS1860 (deaD)
Messenger RNA biogenesis [BR:
cms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CMS1860 (deaD)
Ribosome biogenesis [BR:
cms03009
]
Prokaryotic type
rRNA helicases
CMS1860 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
adh_short
Cas3-like_C_2
AAA_22
UvrA_inter
AIRS_C
Motif
Other DBs
NCBI-ProteinID:
CAQ01964
UniProt:
B0RE04
LinkDB
All DBs
Position
1967798..1969555
Genome browser
AA seq
585 aa
AA seq
DB search
MSTDETASPSETDAPRTTFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGV
AQTGTGKTAAFALPILSNLDVAQKTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPV
YGGQGYGVQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAED
VETILADTPKSKQIALFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSY
PQKVDALTRILETENFEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVE
QLKNGKLDILVATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFV
TPRERRLLTAIEKATRQPLTEMRMPSAEDVNVTRLSRFDDAITAALADRERLDAFRDIVG
HYVNHHDVVESDVAAALAIVAQGDTPLLLSADDLRPPRVERERRDDRPGRDGDDRGERRA
RPARGSGNMATYRIDVGRRHRVEPRQIVGALANEGGFSREDFGHIDIRPDFSLVELPAAT
SDDQLRKLANTLINGRPIDIRPDRGGPRAAERGAAPERRGRKPRD
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgacgaaaccgcctctccttccgagacggacgccccccgcacgaccttcagc
gacctcggtctctccgaccaggtgctcaaggcactcaaggacgtgggctacgagacgccc
tccgcgatccaggccgccacgatcccctccctcctgtccggccgcgacgtcctcggcgtc
gcgcagaccggcaccggcaagacggccgcgttcgcgctgccgatcctctccaacctcgac
gtcgcgcagaagacgccgcaggccctcgtcctcgcccccacccgcgagctcgcgctccag
gtgtgcgaggcgttcgagcgctacgcgtccggcatgcgcggcgtgcacgtgctgccggtc
tacggcggccagggctacggcgtgcagctgtcggcgctccgtcgcggcgtgcacgtggtc
gtcggcacccccggccggatcatggaccacctcgacaagggcaccctcgacctgtcgcag
ctgaagttcctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgcggaggac
gtggagacgatcctcgccgataccccgaagtcgaagcagatcgcgctgttctcggccacg
atgcccgcgcagatccgccgcatctcgggcaagtacctgcaggaccccgaggagatcacg
gtcaagaacaagaccacgacctccgcgaacaccacgcagcggtacctgatggtgtcgtac
ccgcagaaggtcgacgccctcacgcgcatcctcgagaccgagaacttcgagggcatgatc
gtgttcgtccgcaccaagaacgagacggagacgctcgccgagaagctgcgggcccgcggc
tacgcggccgccgccatctcgggcgacgtcgcgcaggcccagcgcgagcgcacggtcgag
cagctgaagaacggcaagctcgacatcctcgtggccaccgacgtcgcggcgcgcggcctc
gacgtcgaccggatcagccacgtcgtcaactacgacatccccatcgacaccgagtcgtac
gtgcaccgcatcggccgcacgggtcgcgcgggccgcagcggcgcggcgatcagcttcgtg
acgccgcgcgagcgccgcctcctcaccgccatcgagaaggccacgcgccagccgctcacc
gagatgcgcatgccgagcgccgaggacgtgaacgtcacgcgcctctcccgcttcgacgac
gcgatcaccgcggccctcgccgaccgcgagcgcctcgacgcgttccgcgacatcgtgggc
cactacgtgaaccaccacgacgtcgttgagtccgacgtggccgccgcgctcgcgatcgtg
gcgcagggcgacaccccgctcctcctctcggccgacgacctccgtccgccgcgcgtcgag
cgcgagcgccgggacgaccgcccgggccgcgacggcgacgaccgcggcgagcgtcgcgcc
cgccccgcccgcggcagcggcaacatggcgacgtaccgcatcgacgttggccgccgccac
cgcgtcgagccccgccagatcgtcggggcgctcgccaacgagggcggcttcagccgcgag
gacttcggccacatcgacatccgtcccgacttctcgctcgtcgagctgccggcggccacg
tccgacgaccagctgcgcaagctcgcgaacacgctgatcaacggccgcccgatcgacatc
cgcccggaccgcggcggcccccgcgccgccgagcgcggtgcggccccggagcgtcgcgga
cggaagccgcgcgactga
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