Clavibacter sepedonicus: CMS2577
Help
Entry
CMS2577 CDS
T00678
Symbol
hrdD
Name
(GenBank) RNA polymerase principal sigma factor HrdD
KO
K03086
RNA polymerase primary sigma factor
Organism
cms
Clavibacter sepedonicus
Pathway
cms02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CMS2577 (hrdD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cms03021
]
CMS2577 (hrdD)
Transcription machinery [BR:
cms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CMS2577 (hrdD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
KORA
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
CAQ02657
UniProt:
B0RI86
LinkDB
All DBs
Position
complement(2722231..2723274)
Genome browser
AA seq
347 aa
AA seq
DB search
MTMTPTRTTAAETASDTELDHIESARPVDPYADSDLPEPSLVTPGASTDAVKDYLRQIGR
VPLLTAELEVSVARRIEVGVLSQEVLDTRTDLTPAERREYQTLAQDGMRAKQHLVNANLR
LVVSIAKRYTGRGLPFLDLIQEGNMGLVRAVEKFDYQAGFKFSTYASWWIKQSITRGMAD
TSRTIRIPVHTVEHINRINAVQRELGDELGRDPSMEEIARESDTPVTKVRYLLDRAQEPM
SLQVLVGGSGGDGDTEMADLIEDADVTQPIDVVTQQLMAAHVTRLIDGLAERDAEVVRMR
FGLAGLEPRSLAFVSQQLGVTRERVRQIEKKVLAKLRIPELEMYIRG
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgacaccgaccaggaccacggccgccgagaccgcctccgacaccgagctcgac
cacatcgagtccgcccgccccgtggatccgtacgcggactccgacctccccgagccctcg
ctcgtcacccccggcgccagcaccgacgccgtgaaggactacctgcgccagatcggccgc
gtgccgctgctgaccgccgagctcgaggtgagcgtcgcccgccgcatcgaggtgggcgtg
ctgtcgcaggaggtcctcgacacccgcaccgacctcacccccgccgagcgccgcgagtac
cagacgctggcccaggacgggatgcgcgccaagcagcacctcgtgaacgcgaacctgcgc
ctcgtcgtcagcatcgccaagcgctacacgggccgcggcctgccgttcctggacctcatc
caggagggcaacatgggcctcgtccgcgccgtcgagaagttcgactaccaggccggcttc
aagttctcgacctacgcgtcctggtggatcaagcagtccatcacccgcggcatggccgac
acgagccgcaccatccggatccccgtgcacacggtcgagcacatcaaccgcatcaacgcc
gtgcagcgcgagctcggagacgagctcggccgcgacccctccatggaggagatcgcgcgc
gagtccgacacgcccgtcaccaaggtgcgctacctgctcgaccgcgcgcaggagcccatg
tcgctgcaggtcctcgtgggcggcagcggcggcgacggcgacaccgagatggccgacctc
atcgaggacgccgacgtcacgcagcccatcgacgtggtgacgcagcagctcatggccgcg
cacgtcacgcgcctcatcgacgggctcgccgagcgcgacgccgaggtcgtgcggatgcgc
ttcggcctggccggcctcgagccgcgctcgctcgccttcgtgagccagcagctcggcgtg
acgcgcgagcgcgtgcgccagatcgagaagaaggtgctcgccaagctccgcatcccggag
ctggagatgtacatccgcggctga
DBGET
integrated database retrieval system
