Clavibacter sepedonicus: CMS2600
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Entry
CMS2600 CDS
T00678
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cms
Clavibacter sepedonicus
Pathway
cms03420
Nucleotide excision repair
cms03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CMS2600
03430 Mismatch repair
CMS2600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cms03400
]
CMS2600
Enzymes [BR:
cms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMS2600
DNA repair and recombination proteins [BR:
cms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CMS2600
MMR (mismatch excision repair)
Other MMR factors
CMS2600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_12
AAA_30
AAA_11
ResIII
AAA_16
PPS_PS
DEAD
Motif
Other DBs
NCBI-ProteinID:
CAQ02679
UniProt:
B0RIA8
LinkDB
All DBs
Position
complement(2752642..2755089)
Genome browser
AA seq
815 aa
AA seq
DB search
MSADPAALSPSSTPIILDGRSGADGGPGAPADPLLEGLNPEQREAVVYRGPALLVVAGAG
SGKTRVLTHRIASLIESREAWPSQILAITFTNKAAAEMRERVESLLGQASEGMWISTFHS
ACVRILRREAEAFGFTQNFTIYDSADSRVLIKRIIKQLDADTLGFTVSSVSGRISKLKNE
LSDADTFARTANFNDPAEAMFVEIFRQYTRSLAAANAFDFDDLIGQTVYLFRAFPKVAAL
YQRRFRHVLVDEYQDTNHAQYSLIRELTRAVAPEDVPVDTRMSTNGMGGIDGASLTVVGD
SDQSIYAFRGADIRNITEFERDFPQSKVVLLEQNYRSTQNILTAANAVISNNFDRKDKKL
WTSIGDGDKIVGFTGYSGHDEAQFVADEIQKLHEEGTAYSEIAVFYRTNAQTRALEEILI
RSAVPYRIMGGTKFYERAEIKDAMAYLVAVANPADVLALRRILNTPKRGIGPATETALAN
FAESHGVTFREAMRRASELGLGPKVTQAILTLSRMLDEVALLLDPERPEGRTSVSDLVTT
LLKRSGLVQALRASKDAQDEARAENVEELVAVTKEFSRNNPEGQLVDFLTEVSLVAAADE
LDDSNGTVSLMTLHTAKGLEYDSVFLTGVEEDLLPHRMSANEPGGPAEERRLFYVGITRA
RRRLFISLAMTRAQFGEVNVAMPSRYLQEIPAELIDWKQSPGMATSRGGTQPRALNARRE
GGGYGGRSRSSSGFEDPALPPPRPKTQWANTVTGQVRDNGDLELAFGDRIRHTDFGDGRV
TGVAGEGRKRIAEVQFDGPAGRKRLLIKIAPIEKL
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgaccccgcagccctttccccctccagcacgccgatcatcctcgacggccgg
tcgggtgccgacgggggccctggagccccggcggatccgctgctggagggcctcaacccg
gagcagcgcgaggccgtcgtctaccggggtccggctctgctcgtcgtcgccggcgccgga
tccggcaagacgcgcgtgctcacccaccgcatcgcgagcctcatcgagtcgcgcgaggcg
tggccgagccagatcctcgccatcaccttcacgaacaaggccgcggcggagatgcgcgag
cgtgtcgagtcgctgctcgggcaggcttccgagggcatgtggatctcgaccttccactcc
gcgtgcgtgcgcatcctccgacgcgaggcggaggccttcggcttcacgcagaacttcacc
atctacgactccgccgacagccgcgtgctcatcaagcggatcatcaagcagctcgacgcg
gacacgctcggcttcaccgtctcctcggtgtccggccgcatctccaagctcaagaacgag
ctgtcggacgcggacacgttcgcgcgcacggcgaacttcaacgatccggccgaggccatg
ttcgtcgagatattccggcagtacacgcgttcgctcgcggcggcgaacgcattcgacttc
gacgacctcatcggtcagaccgtctacctcttccgcgccttccccaaggtcgccgcgctc
taccagcggcgcttccggcacgtgctggtggacgagtaccaggacacgaaccacgcccag
tactccctcatccgcgagctcacgcgcgcggtggccccggaggacgtgcccgtcgacacg
cgcatgtccacgaacggcatgggcgggatcgacggggcgtcgctcaccgtggtgggcgac
agcgaccagtcgatctacgccttccgcggcgccgacatccgcaacatcaccgagttcgag
cgcgacttcccgcagtcgaaggtcgtgctcctcgagcagaactaccggtcgacccagaac
atcctcaccgccgccaacgccgtcatctccaacaacttcgaccgcaaggacaagaagctg
tggacctccatcggcgacggcgacaagatcgtcggcttcaccgggtactcggggcatgac
gaggcgcagttcgtcgccgacgagatccagaagctgcacgaggagggcaccgcgtactcc
gagatcgccgtcttctaccggaccaacgcgcagacgcgcgcgctcgaggagatcctcatc
cgctcggccgtgccctatcggatcatgggcggcacgaagttctacgagcgggcggagatc
aaggacgcgatggcgtacctggtcgccgtggcgaaccccgccgacgtgctggctctccgg
cgcatcctcaacaccccgaagcgcggcatcggcccggccacggagacggccctcgccaac
tttgcggagtcgcatggcgtgaccttccgcgaggcgatgcgccgcgcgtccgaattgggg
ctcgggcccaaggtgacgcaggccatcctcacgctctcccggatgctcgacgaggtggcg
ctgctgctggatcccgagcggccggagggacggacctccgtcagcgacctggtgacgacg
ctcctcaagcgcagcggcctcgtgcaggcgctgcgggcgagcaaggacgcgcaggacgag
gcacgcgccgagaacgtcgaggagctcgtcgccgtgacgaaggagttctcgcgcaacaac
cccgagggccagctggtggacttcctgacggaggtctcgctcgtcgccgcagcggacgag
ctcgacgactcgaacggcaccgtgtccctcatgaccctccacacggcgaagggcctcgag
tacgactcggtgttcctcaccggcgtcgaggaggacctgctgccgcaccggatgtcggcc
aacgagcccggcggcccggccgaggagcgtcgcctgttctacgtcggcatcacgcgcgca
cggcggcgtctcttcatctcgctcgccatgacgcgcgcgcagttcggcgaggtgaacgtc
gccatgcccagccggtacctgcaggagatcccggccgagctcatcgattggaagcagtcg
cccggcatggccacctctcggggtggcacgcaaccgcgcgccctcaacgcacggcgggag
ggcggcggatacggcggccgctcgcgctcgtcgagcggcttcgaggatccggccctgccg
ccgccgcgccccaagacccagtgggccaacacggtcaccgggcaggtgcgcgacaacggc
gacctcgagctcgcgttcggcgaccgcatccggcacaccgacttcggcgacggccgcgtc
acgggcgtcgcgggcgagggacgcaagcgcatcgccgaggtgcagttcgacgggccggcg
ggtcgcaagcggctgctcatcaagatcgcgcccatcgagaagctctag
DBGET
integrated database retrieval system
