Clavibacter sepedonicus: CMS2608
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Entry
CMS2608 CDS
T00678
Name
(GenBank) geranylgeranyl pyrophosphate synthase
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
cms
Clavibacter sepedonicus
Pathway
cms00900
Terpenoid backbone biosynthesis
cms01100
Metabolic pathways
cms01110
Biosynthesis of secondary metabolites
Module
cms_M00364
C10-C20 isoprenoid biosynthesis, bacteria
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
CMS2608
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cms01006
]
CMS2608
Enzymes [BR:
cms01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
CMS2608
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
CMS2608
2.5.1.29 geranylgeranyl diphosphate synthase
CMS2608
Prenyltransferases [BR:
cms01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
CMS2608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Se-cys_synth_N
Tnp_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
CAQ02687
UniProt:
B0RIB6
LinkDB
All DBs
Position
complement(2761888..2762910)
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AA seq
340 aa
AA seq
DB search
MNGVLDAFFARSLVRAEVMGDEYVKLWRTLESNTAGGKRFRPRMVMAAYDGLGGQDVQAA
AHVGAAFEMLHTALIVHDDVIDRDFTRRGGPNVSGAYRDIATTQGLPQPLAEHRGMSAAV
IAGDLALVNAYRLIDASGVRDLTRSHLMEILDDAVFASAAGELIDVEFSLTADVPSVDEI
LRMERLKTAVYSFEAPLQAGAVLAGARPEVVAALGDFDRDIGIAYQVVDDVLGVFGDEQE
TGKTNLGDLREGKRTVLIAHAVRSSEWGEISALVGKDDLSRGEAALVRSVLESSGARAYA
EGVARDLAVAAVARLDDPVVPEALRRELAPVAESVLGRIR
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
gtgaacggcgtgctggacgcgttcttcgcccgctcgctcgtgcgcgccgaggtcatgggc
gacgagtacgtgaagctgtggcgcacgctcgagtcgaacacggcaggcggaaagcgcttc
cgtccgcgcatggtcatggccgcgtacgacggcctgggcggccaggacgtgcaggccgcg
gcccacgtcggcgccgcgttcgagatgctccacaccgcgctcatcgtccacgacgacgtc
atcgaccgggacttcacccggcgcggcggccccaacgtctcgggcgcctaccgcgacatc
gccaccacgcagggcctgccccagccgctcgccgagcaccgcggcatgtccgccgccgtg
atcgcgggggatctggccctcgtcaacgcctaccgcctgatcgacgcgagcggcgtgcgc
gacctcacgcggtcgcacctgatggagatcctcgacgacgccgtgttcgcgtcggccgcg
ggcgagctcatcgacgtcgagttctcgctcaccgcggacgtgccgagcgtcgacgagatc
ctccgcatggagcgcctcaagaccgccgtctactcgttcgaggcgccgctgcaggccggc
gccgtgctcgcgggcgcgcggcccgaggtggtcgcggcgctcggcgacttcgaccgcgac
atcggcatcgcgtaccaggtggtggacgacgtgctcggcgtcttcggcgacgagcaggag
accggcaagaccaacctcggcgacctccgcgagggcaagcgcacggtgctcatcgcgcac
gccgtccgctcgtcggagtggggcgagatcagcgcgctcgtcggcaaggacgacctctcc
cgcggcgaggcggcgctcgtccgctcggtgctggagagctcgggagcgcgggcctacgcc
gagggcgtggcgcgggatctcgcggtcgccgccgtcgcgcgcctcgacgacccggtcgtg
ccggaggcgctccgccgggagctcgcgcccgtcgcggagtccgtgctcgggcgcatccga
tga
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