Cordyceps militaris: CCM_00009
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Entry
CCM_00009 CDS
T03108
Name
(RefSeq) topisomerase II associated protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cmt
Cordyceps militaris
Pathway
cmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCM_00009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmt03019
]
CCM_00009
Messenger RNA biogenesis [BR:
cmt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CCM_00009
mRNA degradation factors
5'-3' decay
Decapping complex
CCM_00009
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
18162044
NCBI-ProteinID:
XP_006665232
UniProt:
G3J6B9
LinkDB
All DBs
Position
Unknown
AA seq
838 aa
AA seq
DB search
MSFFSFDTGGHNAAAPGFSQAHDPFAALSGGNTGADDALDFEDTYDGLGDKLDDADDAFN
DDTFGGGSGGGDVVKTSKVGKDFDFFGQTAKVADAIEEEHLRFNRQQPVAKSNAPQGYTA
QPPTDPYNAPQQHQQPQQPQQPQQHQQHQQHHYQQQQYHQAPARTGYEKYRATEPIPDLH
VDQSIWGIGASKAAAAPEAQSKSRKMMSLEEVEAAMRSEPKAATAAQQPAQQPAQQSSPA
QPQVNAGYYPGHQQMPAHQGQYSQQGPAQGHPVTILQRPQSGQEPHQRQVLTEEQFLRQH
AHPTQILQNPNRLSGDAQRGAFAGQAGQHHGRTPSGAGPMHHLHNHPQLSGMSEEEKAAF
LDQETKRAKRNHKIWLLSKDNGVMTPQDKNFITRIQLQQLIAATGNPAEQTGDTSIAEDF
YYQVYSHIRAGQRQNPSQPLSNFAQTYLFQTGSRHGPRRHGRPAENHIQRMEQQVQRAVE
AAKNKPKNPQLVIAGSLGKISFSNAKTPKPLLNIQRKEAESPRPATARSATTGPDRRAIL
RNVERVYDTLMKLEDQVRAIPPPMAGPVDHALEEKHREWAAELEALNAQLWNELKVHEPI
GATVPHPFIAFLSCAKGKKAIPRIFPHLNFEQRTTILTMIVYHLDQLDVVQGAAVTDDDT
TLNSRMRENIELFLSTVMPSLMQYFNDTGLDIVDGVLNLIATKLNLDLIAKTRIGLSMLT
LILSRTVLLKQTGAGNPEQWQKWEQTFDILFSRLEPSLPHMFPGSVNAGIDVYVWQFLAA
MGVSANHDQQTRLVLAVKDRVLDTVTLSKTLPPAMATERLASVNLFMRAIGLDVELLQ
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcttcagtttcgacacaggtggccacaacgctgctgctccgggcttctcccaa
gcgcacgacccctttgctgccctctcaggcggtaataccggcgccgacgacgcccttgac
ttcgaggatacctacgacggtcttggcgacaagcttgacgatgcagatgacgccttcaac
gacgatacgtttggcggtggaagcggtggcggtgatgtagtcaaaacctccaaggttggc
aaggattttgacttcttcggtcagactgccaaggttgccgatgcaatcgaggaggagcac
cttcgattcaaccgccagcaacccgtcgccaagtcgaatgcccctcagggatataccgcc
caacctcctaccgatccctacaatgctccccagcagcatcagcagcctcagcagcctcag
cagcctcagcagcaccagcagcaccagcagcaccactatcaacaacagcaatatcatcaa
gctcctgctcgcactggctacgaaaagtatcgcgcaacagaacccatccccgatctccat
gtcgaccaaagcatctggggcatcggcgcttccaaggctgccgctgctcccgaagcgcaa
tcaaagagtcgcaagatgatgagtttggaggaggttgaggcagccatgcgatctgagccc
aaggcagccacggcagcccagcagcctgcccagcagcctgcccagcagtccagcccagcc
caacctcaagtgaatgcaggctactacccaggacaccagcagatgcctgctcaccaggga
cagtattctcagcaaggccctgcccaaggtcaccccgtcaccatccttcagcgtcctcaa
tctggacaggagcctcatcagcgccaagtccttactgaggaacagttcttgcgccagcac
gctcacccgacccaaatattgcagaacccaaacaggctctccggcgatgctcagcgcggc
gctttcgctggtcaagctggtcagcatcatggaagaactccaagtggtgctggtcctatg
catcacttgcacaaccaccctcaactgtccggcatgtccgaagaggaaaaagcggctttc
ctagatcaggaaaccaaacgtgccaagcgtaaccacaagatttggcttttgtccaaggac
aatggcgtaatgacccctcaggacaagaacttcatcacgcgaattcagctgcagcagctc
atagctgccaccggcaatcctgcagagcagacgggcgacacttccattgccgaagacttt
tactaccaggtttacagccacatccgtgccggccagagacagaaccctagtcaacccctc
agcaactttgctcagacctatctgttccagactggcagccgtcatggaccacgtcgccac
ggccgccctgctgagaaccacattcagcgtatggaacagcaggtgcagagagctgtcgag
gcggccaagaacaagcccaagaacccccagctggtaattgctggcagtctcggtaaaatc
tcgttcagtaacgccaagactcccaagccccttctcaacattcagcgaaaggaggccgag
tctcctcgtcctgccaccgcacgaagcgccactaccggacctgatcgcagagctatactg
cgcaacgttgagcgtgtctatgacactctcatgaaactcgaagaccaggtcagagccatc
ccacctcccatggctggcccggtcgaccatgcgctggaggagaagcaccgcgaatgggcc
gcagagctcgaggctctaaatgcccagctctggaacgagctcaaagttcatgagcccatc
ggcgccactgtgcctcacccgttcatagctttcttgtcttgtgccaagggcaagaaggcc
attcctcgcatattcccccaccttaacttcgagcagcgcactaccattttgacaatgatt
gtgtatcaccttgatcagcttgacgtggttcaaggtgccgccgttactgacgatgatacc
acgctcaactcgagaatgcgtgaaaatattgagctcttcctatcaaccgtcatgccatcg
ctcatgcaatacttcaacgacactggtctggacattgttgatggggtcctgaacttgatt
gccactaagctgaacctggacctgattgcaaaaactcgcattggtctttcaatgctcact
ttaatcctaagccgaactgttcttctgaagcagactggtgctggcaaccctgagcagtgg
cagaagtgggaacaaacttttgatattctcttcagccggctagagccctcgctccctcac
atgttccccggcagcgtcaacgccggtatcgatgtctatgtctggcaattcctcgctgcc
atgggcgtcagcgcgaatcacgaccaacagacacgcttggtcctggccgtcaaagaccgt
gttctcgacaccgtcactttgtccaagactctaccaccggccatggccacagaacgcctg
gccagtgtcaatctattcatgagagccattggccttgatgtggaactcttgcagtaa
DBGET
integrated database retrieval system
