Cordyceps militaris: CCM_00347
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Entry
CCM_00347 CDS
T03108
Name
(RefSeq) cell differentiation protein rcd1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
cmt
Cordyceps militaris
Pathway
cmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCM_00347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmt03019
]
CCM_00347
Messenger RNA biogenesis [BR:
cmt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CCM_00347
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rcd1
PAT1
VPS13_N
TFIIA
eIF-3_zeta
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
18162382
NCBI-ProteinID:
XP_006665570
UniProt:
G3J3L7
LinkDB
All DBs
Position
Unknown
AA seq
398 aa
AA seq
DB search
MMPSAHVYGHHQFGHQAESSWMHQQPGHHQQQHPQQGGGASAAQQQQQQQQQQQQQQQQQ
AQQAQQAQQAQQQAQQAQQQHYNRLANNNHTNNNHANNGNQNTAHSQQDNGHEHISEDNR
RTMAYIADLLHENTREAALLELSKKREQVPELALILWHSFGVMTSLMQEIISVYTLLNPS
QLTAAASNRVCNALALLQCVASHNETRALFLNAHIPLFLYPFLNTTSKSRPFEYLRLTSL
GVIGALVKNDSTEVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDNGLNYIC
ATYERFYAVGTVLSNMVAQLVESQTARLLKHVVRCFLRLSDNARAREALRQCLPEPLRDA
TFSSVLRDDAATKRCLAQLLINLSDNVGDPSNSGVSGM
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgatgccctcggcgcatgtctacggacatcaccagtttggccaccaggccgagtcgtcc
tggatgcaccaacagcccggccatcatcagcagcagcacccgcagcagggaggcggcgcc
tcggccgcgcagcagcagcagcaacagcagcagcagcagcagcagcagcagcagcagcag
gcgcagcaagctcagcaagctcaacaagcacagcagcaggcgcagcaagcacagcagcag
cattacaaccgtctcgccaataacaaccacacaaacaacaaccatgctaacaacgggaac
caaaataccgcgcatagccagcaggataacggccacgagcatatctccgaggacaaccgc
cgcaccatggcctacatcgccgacctcttgcacgaaaacacccgcgaggccgcgctcctc
gagctaagcaagaagcgcgagcaggtgccggaactggccctcatcctgtggcattcgttt
ggtgtcatgacgtccctcatgcaagaaatcatctccgtctacacgcttctcaacccttcc
cagctcacggcagccgcctcaaaccgcgtctgcaatgctctcgccctgctgcagtgcgtc
gcatcgcataatgagacgcgcgccctcttcctcaacgcgcatattccactctttctctac
ccgttcctcaacaccacctccaagtcgcgaccctttgagtacctgcgtttgactagtcta
ggcgtcattggcgccctagtcaagaacgactctacagaagtcatcaactttctgctgacc
accgagataattcctctgtgcctccgcatcatggagactggctcagaacttagcaagact
gtcgccatctttatcgtccaaaaaatattgcttgatgacaatggtcttaactacatctgc
gccacctacgagcggttctacgccgtcggtactgtcctgagcaacatggtggctcagctc
gtcgaatcccaaactgcgcgtctgctcaagcacgttgtccgttgcttccttcgcctgagt
gataatgccagagctcgcgaggccctgcgccagtgcctccccgaacccctccgcgatgct
actttctcgtctgttctgcgcgatgacgcggctaccaagcgttgtctcgctcagctactc
atcaatctctctgacaatgtcggcgaccctagcaactctggcgtttcgggcatgtga
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