Cordyceps militaris: CCM_00512 Help Entry CCM_00512         CDS       T03108                                  Name (RefSeq) nonsense transcript regulator   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism cmt  Cordyceps militaris Pathway cmt03013   Nucleocytoplasmic transport cmt03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cmt00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CCM_00512    03015 mRNA surveillance pathway     CCM_00512  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cmt03019]     CCM_00512 Enzymes [BR:cmt01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      CCM_00512     5.6.2.5  RNA 5'-3' helicase      CCM_00512 Messenger RNA biogenesis [BR:cmt03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CCM_00512    mRNA cycle factors     Common to processing body (P body) and stress granule      CCM_00512 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD Viral_helicase1 UvrD-helicase SLFN-g3_helicase NPHP3_N PIF1 Helicase_RecD ATPase nSTAND3 AAA_22 SRP54 AAA_16 Ribosomal_S13_N PhoH Motif Other DBs NCBI-GeneID:  18162547 NCBI-ProteinID:  XP_006665735 UniProt:  G3J4I8 LinkDB All DBs Position Unknown AA seq 1084 aa AA seqDB search MEGAFTHVGNHLISDSAAAINAGNDDLSTLDPEERLLYGKLGDHGGRRRADDDDNQTEVF EDDNDSLGSVPVDEMVGLNLKNTEEEKELPAYACAYCGIHAPASVVKCLICNKWFCSARG NSTSSHIINHLVRARHKEVQLHPESALGDTILECYSCGTKNSFLLGFIPAKSDSVVVLLC RQPCAASASNKDMNWDPSRWEPLIKERAFLDWLVSAPSEAEQLRARHMSPNTIARLEEMW KLEPNATISDLDKDQTIDDDPKPVILKYEDAFHYQNIFGPLVKMESDYDKKLKEAQSEDN LTVEWSLGLNNKHLATFNLRKIESGEVKLAVGDEMLLRYNGELREPWQGVGYVMKIPNSQ SDEVCLELRKTGNDRSNPTDLSHNFSADYVWKATSYDRMQLAMKTFAVDDMSVSGFIFHT LLGHDVHLQPMKSNLPKKWSAPGLPDLNQSQVDAIRSVLQKPLSLIQGPPGTGKTVTSAT IIYHLSKMSGNQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESSVSFLALHEQ VRMSEHNSEFAKLSQLKIEAGELISQDEKKFRQLTKAAEREILTNADVVCCTCVGAGDPR LSKIKFRSVLIDESTQSAEPECIIPLMLGCKQVVLVGDHKQLGPVIMNKKAAKAGLSQSL FERLMQLRLQPILLNTQYRMHPCLSEFPSNMFYDGSLQNGVTQEQRIRKDVDFPWPVAEM PMMFWSNIGNEEISTSGTSYLNRTEASNVEKIVTRFFKAGVKPAEIGVITPYEGQRSYIV TTMQNSGTSKKDLYKGVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALT RAKYGLVILGNPRVLSKHELWYNLLTHFRDRRCFVEGPLNNFQQCLLQFSKPRSHRQKPT NHLPVGGYQTPQNGRFNGSGTMRDFDSGSMMSYVPDDVSSIHGSTFGGAALNSSFPAMFS NFAPEHWPGLPGVAGPGRGGKSRARAAAESVTGDSVANSETTESSSSIIGSRGVGQGGVS LGAGLQDAVTGMRAISYTQSDRLRQYVESGARIPPNNRYGGRRYDDDDKSVSTAFHSQVG GGYD NT seq 3255 nt NT seq  +upstreamnt  +downstreamnt atggagggagccttcacccatgtcggcaatcacctcatttccgactcggcggcagcaatc aacgctggaaacgacgatctttccaccctcgaccccgaagagcgccttctctacggcaag ctgggcgaccatggtggccgtcgacgcgccgatgatgatgacaaccagactgaagtcttt gaggacgacaacgacagcctgggtagtgttccagtcgacgaaatggtaggactgaacctc aaaaacaccgaggaggagaaagagctccccgcgtacgcatgcgcatactgcggtattcac gctcctgcgtccgtcgtcaagtgtcttatctgcaacaaatggttttgcagcgcccgcggc aacagcacgtcttcgcacatcatcaaccatctcgttcgagctcgccacaaggaagtccag cttcaccccgaatccgccctcggcgatactattctcgaatgctatagctgcggtaccaaa aactcattcctgctcggttttattcccgccaagtccgactctgtcgttgttttgctgtgt cgccagccctgcgcggcgtcggcctcgaacaaggatatgaactgggacccctcccgctgg gagccattgatcaaggagcgcgcgtttctcgactggcttgtcagcgccccctccgaagct gagcagttacgcgcccgtcacatgtctcccaacaccatcgcccgtctcgaggagatgtgg aagttggagcccaacgccaccatttccgatctagacaaggaccagactatcgacgacgat cccaaacccgtgatcctaaagtatgaggatgcgtttcactaccaaaacatcttcgggccg cttgtgaagatggaatccgactacgacaaaaagctcaaagaggcgcagtccgaggataat ttgaccgtcgaatggtccctaggtctcaacaacaagcacctggccactttcaatctgcgc aagattgaatccggagaagtcaagcttgccgttggtgacgaaatgctacttcgttataac ggcgaactcagagagccttggcagggtgtcggttatgtcatgaagattcccaacagtcag tccgacgaggtttgtcttgagctgcgtaagactggcaatgacagatcgaacccaaccgac ctttcccacaacttctccgccgactatgtctggaaggccacctcgtatgaccgcatgcag ctcgccatgaagacctttgccgtcgacgacatgagcgtctctggtttcattttccacacg ctgcttggccacgatgttcatctgcagccaatgaagtctaaccttcctaagaagtggtct gcaccaggtctgccagatttgaaccaaagtcaagttgacgcgattcgatcagttctccag aagccgctcagtcttatccaaggccctcccggtactggtaagacggtgacatctgccacc atcatctaccacctgtccaagatgagcggaaaccaagtcctcgtttgcgctccctccaac gttgccgttgatcagctctgcgagcgcatccaccgcaccggcctcaaggtcgtccgacta actgccaaatcccgtgaagatgtcgaatcttccgttagtttccttgctcttcacgagcag gtacgcatgtcggagcataatagtgaattcgccaagttgtcgcaactcaaaatcgaggct ggcgaactgatcagccaagatgaaaagaagtttagacagttgaccaaggcagctgaacga gagattctcacgaacgctgacgttgtttgctgtacctgcgttggtgccggcgaccctcgt ctgtccaaaatcaagtttcgcagcgtactcattgacgaatcaactcagtctgcagagcct gaatgtatcattccccttatgctggggtgcaaacaagttgttcttgtcggcgatcacaag cagctcggcccggtcatcatgaacaagaaggcggccaaggccggtctgagccagtcgtta tttgagcgcctcatgcagcttcgcctccaacccattctcctcaacacccagtatcgcatg catccgtgtctgtcggagttcccctccaacatgttttacgacggcagcctgcaaaatggt gtcacgcaagaacaacgcatccgcaaggatgtcgactttccctggcctgtcgctgagatg cccatgatgttctggtccaatatcggcaacgaagaaatctctaccagtggcacttcctac ctgaaccgaacagaagcctccaacgtcgagaagattgtcacacggttcttcaaggcgggt gtcaagcctgccgagattggtgtcattacaccatacgaaggccagcgaagctacattgtc acgacgatgcaaaactcgggcacgtcgaagaaggatttatacaagggtgtcgaggttgcg tccgtagacgccttccagggtcgtgagaaggacttcattgtgctgtcttgcgtgcgttcc aacgagaaccaaggcattggtttcctgtctgatcctcgccgtctcaatgtcgcccttaca cgtgccaagtacggccttgtcattcttggcaaccccagagtcctttccaagcacgagctt tggtacaatcttctgactcacttccgtgaccgtcgctgcttcgtcgaaggccccttgaac aacttccagcagtgccttctgcaattcagcaagccccgatcgcaccgccagaaacccacc aaccatcttcccgttggcgggtaccagaccccgcagaacggacgcttcaacggctctggc acgatgcgtgactttgactctggctccatgatgtcctacgtccccgacgacgtatcatcc atccacggctcgacctttggcggcgccgcgctcaactcgtcgttccctgctatgttttcc aacttcgcccccgagcactggcctggtctgcccggcgtcgctggcccgggccgcggtggc aagagccgcgcccgcgcggcggccgagagcgtcaccggtgacagcgtcgccaactcggag acgacggagtcctcgtcgagcattattggcagtcgcggcgtaggccagggtggcgtcagt ctgggtgccggtctgcaggacgccgtcacgggcatgcgcgccatctcctacacccagagc gaccgtctgcgacagtacgtggagagcggcgcccgcattcctccgaacaatcgctacggc ggccgtcggtacgatgacgacgacaagagcgttagcacggctttccatagccaagtcgga ggtggctacgactga

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