Cordyceps militaris: CCM_01364
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Entry
CCM_01364 CDS
T03108
Name
(RefSeq) cleavage and polyadenylylation specificity factor, putative
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cmt
Cordyceps militaris
Pathway
cmt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CCM_01364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmt03019
]
CCM_01364
Messenger RNA biogenesis [BR:
cmt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CCM_01364
U7-dependent histone pre-mRNA processing factors
CCM_01364
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
18163395
NCBI-ProteinID:
XP_006666583
UniProt:
G3J4P1
LinkDB
All DBs
Position
Unknown
AA seq
1024 aa
AA seq
DB search
MRRDQQDGPDQANHSSTHTLVSAAGSPPHRTIATMFTFCPLQGAQSESLASQSLLELDGG
VKVLVDLGWDESFDVAKLEELEKQVPTLSLILLTHATASHIAAYVHCCKNIPLFTRIPVY
ATRPVIDLGRTLTQDLYSSTPAAATTVPPAALSASAYAYTQAATTTQNLLLQSPTPDDIA
RYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNAGHTLGGTIWHIQHGLESIVYAVDW
NQARENVFAGAAWLGGAGGGGAQVIEQLRKPTALICSSRGAERNAQAGGRAKRDEQLLET
IKAAVARGGTVLIPVDSSARVLELAYLLEHAWRTDSASAAGVFKAAKLYLAGRNMASTMR
YARSMLEWMDDGIVQEFEAFAEGQKRTNGASDKKVGGPLDFRFMRLLDRKAQIAKLLSTA
VNNGESKGRVILASDTSMDWGFSKDLLRGLASDPNNVVILTDKPGMAQESSPSIARTLWS
LWKERKDGVATLQTANGDTIEYVNTSGYDLEIRDAKREPLQGEELAVYQQWLATQRQLQA
TQQTVGADGIEASADVVDDVSSDSSSDSEDEDGQQQGKALNVSAALGQVGRKNVVLKDED
LGISILIKKKGVYDFDSRGKRGRERSFPVTVRRKRNDDFGEMIRPEDYLRAEEKEEDTVD
DPNTAADDENLGKKRKWDDVQGTSGNKKPQLGRGTAAGGAFAGDGGEDGNMTGMQDGFEP
DELDAAEDVDVDEPDGPCKLIHTTETIAIHLRIAYVDFAGLHDKRSLNMLIPLIQPRKLI
LIAGTREETLALAQDCRAMLGADSGGSGAGGEKGGADIYTPEVGVVVDASVDTSAWVVKL
ADTLVKKLKWQNVRGLGIVTVSGQLFAAAAAAVGAIAGAAADEDADAANKRQKTSDSSLA
LTTTTSSTPTTTTLIHTTATTPSLPTLDVVTASLAAVAARTAAQPLHVGDLRLADLRRAM
QAAGHAAEFRGEGMLVVDGAVVVRKTAEGQVEVESVGLPAAGRRSALHEVKRAIYDNLAV
VAGA
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagagaccaacaggacggcccggatcaagcaaaccacagttctacgcacactctg
gtgtcggctgcgggctcgcccccccatcgcaccatcgcaaccatgttcacgttttgccct
ctccagggcgcgcaatccgagtcgctggcctcacagtccctgctggagctcgatggcggc
gtcaaggtgctcgtggatctcggatgggatgagtccttcgacgtggccaagctcgaggag
ctggaaaaacaagtcccgaccctctccctcatcctcctgacgcacgcgaccgcctcccac
atcgccgcgtacgtgcactgctgcaagaatatacccctcttcacgcgcatccccgtctac
gcgacccggcccgtcatcgacctcggccggaccctcacgcaggacctgtactcatcgacg
cccgctgcggccaccaccgtacctcccgccgcgctgtccgcgtcggcctatgcctacacg
caggccgcgacgacgacgcagaacctgctgctacagtccccgacccccgacgacattgcg
cgctacttttccctcatccagcccctcaagtactcgcagccgcaccagccgctgccctcg
cccttttcgccgccgctcaacggcctcaccatcaccgcctacaacgcgggccatacgctc
ggtggcaccatctggcacatccagcacggccttgagtccatcgtctacgccgtcgactgg
aaccaggccagggaaaacgtctttgccggcgcggcctggctcggcggcgcgggtggcggc
ggcgcccaggtcattgagcagttgcgcaagccgaccgcgctcatctgcagcagtcgcggt
gcggagaggaatgcacaggcgggcggccgcgccaaacgcgatgagcagctgctcgagacg
atcaaggcggccgtggccaggggcggcaccgtgctgattccggtagactcgagcgcgcgg
gtgctggagcttgcgtacttgctggagcacgcgtggcggacggattcggcgtcggcggct
ggcgtgttcaaggcggccaagctctacttggctggccgcaacatggcgagtaccatgcgc
tacgcacgaagtatgctcgagtggatggacgacggcattgtacaagaattcgaggccttt
gcagagggccagaaaagaaccaacggagctagtgacaaaaaagtaggcggcccgcttgac
tttcgcttcatgcgcctgttggatcgcaaagcacagattgcgaaactcctgagcacggct
gtaaacaatggcgaatctaaagggcgcgtgattctggcgagcgataccagcatggactgg
ggattctccaaggacttgctcagagggttggcgtctgacccgaataatgttgtcatcctt
acagataagcctggtatggcgcaagaaagcagcccgtctattgcaagaacgctatggagt
ctgtggaaagagcgcaaggatggtgttgctacactgcaaacagccaacggcgacacgatc
gaatacgtaaatacaagtggctacgacctggagattcgggatgccaaacgtgaaccgctg
caaggggaagaacttgccgtataccaacaatggctcgccacacaacgacagctccaagct
acgcagcaaacagtcggtgcagacgggatagaggcgtctgcagacgtggtcgacgatgtg
tcttccgattcctcgtcagattcggaagacgaggacggccagcaacaaggcaaggcgcta
aatgtgtcggctgctcttggccaagtcggccgtaagaacgtggttctcaaagacgaggac
ctcggcatcagtattttaatcaagaagaagggcgtctacgatttcgactcgcgaggcaag
cgcggtcgtgagcgatcgttccccgtcactgtgcgcaggaagagaaacgacgactttggc
gaaatgattcggcccgaagactatcttcgtgcggaagaaaaggaggaggataccgttgac
gaccccaataccgccgccgacgacgaaaacttgggcaagaaacgcaagtgggacgacgtg
cagggcactagcggcaacaaaaaaccgcagctcggcagaggcactgccgccggtggcgcc
tttgcaggcgacggcggcgaagacggcaatatgaccggcatgcaggacggtttcgaaccc
gacgagctggacgccgccgaggacgtcgacgtcgacgagcccgacggcccctgcaagctc
atccacacaacggaaacaatcgccatccacctccgcattgcctacgtcgactttgccggc
ctgcacgacaagcgcagtctcaacatgctgatcccgctcatccagccgcgcaagctcatc
ctgatcgccggtacgcgcgaggagacgttggccctggcacaggactgccgcgccatgctc
ggcgccgactctggcgggagcggggctggtggtgagaagggcggtgccgatatatacacg
cccgaagtaggcgtcgtcgtagacgctagtgttgatacaagcgcttgggtcgttaagcta
gccgacacgctcgtcaagaagctaaagtggcaaaatgtgcgtggcctaggcatcgtcacc
gtctctggccagctctttgccgctgccgccgccgccgttggcgccatcgccggcgccgcc
gccgacgaagacgcggacgccgccaacaaacggcaaaagacgagcgactcctccctggcg
ctaacaacaacaacatcatcaacaccgacgacgacgacactaatccacacaacggcgacg
acgcctagcttaccaacactcgacgtggtgacggccagcttagcggccgttgccgcgcgc
acggccgcgcagccgctgcacgtgggcgacctccggctcgcggacctccggcgcgcgatg
caggcggccgggcacgcggccgagtttcgcggcgagggcatgctcgttgtcgacggcgcc
gtcgtcgtgcgcaaaacggccgagggccaggtcgaggtggaaagcgtcggtctgccggcg
gcagggcggcgcagcgcgctgcacgaggtcaagagggcgatttacgacaacttggctgtg
gtggcgggggcgtag
DBGET
integrated database retrieval system
