Cordyceps militaris: CCM_01773
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Entry
CCM_01773 CDS
T03108
Name
(RefSeq) mRNA cleavage factor complex component Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cmt
Cordyceps militaris
Pathway
cmt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CCM_01773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmt03021
]
CCM_01773
03019 Messenger RNA biogenesis [BR:
cmt03019
]
CCM_01773
Transcription machinery [BR:
cmt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CCM_01773
Messenger RNA biogenesis [BR:
cmt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CCM_01773
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
Pfc11_Clp1_ID
zf_PCFS4
VHS
UBZ_FAAP20
Motif
Other DBs
NCBI-GeneID:
18163803
NCBI-ProteinID:
XP_006666991
UniProt:
G3J741
LinkDB
All DBs
Position
Unknown
AA seq
647 aa
AA seq
DB search
MSTESDEVAEDYRLALEDLTSNMRFEISNLTVIARENTEHALAIAEVLQQHILKAPPAKK
LPALYVLDSIVKNVGTPYTLYFGRNLFKIFMESYAMVDGPVRKRMEDMLKTWKDAVPGSM
DTRPVFSHELVRPIENALMRAHAVTMPQYAMAGRGRGVMMPHRNTPTPPGMRGYPVGDGH
GQLQNGGQVPGQYQSHTPCSDNWQANNHRQITPQPGQPQGPYPPPGQYGAGPPGTNVDKL
NQDIENLIVATQAEFSQNPHDAGIQTRLKALMDLRGVIKSALPPDQLELIKNKVTELAAV
NRPSAPPSYTGQNLLPTRAPSGQFQQVTQPVSQHPPGQASLDALLGPGALAALMARTGSN
SNNTTPPGSGAIRSPPPVPAQLPTPAAAAPADAMSLLDRLRQAGMLPPTATPTPAVAQPV
APPPVIPANIASILSAAKAGAFAMANMGTGSLNEVISPDNIINALYDDLGPPCAECGRRF
KRNMEGDKQRRAHMDWHFKVKQRSAEAEKRGTHRSWYVDQQDWLKSREVVDVDHIAQPEP
SAEEQSKAASGPIYMRVPEPTSGINNVCPICQEKFENKWLDTAQEWVWLDAVLVRNRAYH
ASCHAEATRDREGTPGALRRTPEPVLGKRKAEAGLLSPKIRTLKTAY
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagaatcggatgaagtggccgaggactaccgtctcgcgctcgaggatctcacg
tcgaacatgcgattcgaaattagcaacctgactgtgatcgcgcgagagaacactgagcac
gcattggccatcgctgaggttctgcaacaacatattctcaaggcccccccagccaagaag
ctacctgctctctatgtgctcgactccatcgtgaagaatgtcggtactccctacacgctt
tatttcggacggaatcttttcaagatattcatggaatcgtacgcgatggttgacggtccc
gtgcgaaagagaatggaggacatgctgaagacgtggaaagatgcagtccccggatcaatg
gataccaggccggtcttctcgcacgaattggttcggccgatagagaatgctctgatgcga
gctcatgcggttaccatgccacaatatgcaatggctggacggggaaggggagtcatgatg
ccacaccgcaacacacctacgccgccggggatgcgaggctatccggttggtgatggacac
ggccagctgcagaatggagggcaggtacctggccaataccaaagccacacgccatgttct
gacaactggcaggccaacaatcatcgccaaatcacgcctcagccgggccaaccgcaagga
ccttaccccccccctggacagtacggcgctggaccgccgggcacaaacgtagacaagttg
aatcaggatattgagaatctgattgtagcgacacaagccgagttctcacagaatccgcat
gatgcgggtatacaaaccagacttaaagcattgatggatctccgaggtgtcatcaagtcg
gccttgcctccagaccagctcgagctcattaaaaacaaagtaaccgaacttgctgctgta
aacaggcccagtgctcccccctcatacacagggcaaaacctgttacctactcgggcacct
tcggggcagtttcaacaagtaacgcaacctgtcagccagcatccgccaggacaggcgtct
cttgacgcgttgctaggtccaggagcccttgctgctctgatggcaagaactggatctaat
tccaacaatacaacccctcctggctcgggagcaatccgatcacccccgcctgtgccagcc
caacttccaacacctgctgctgcagccccagcagatgcaatgtccttgctggatcgattg
cggcaagccggtatgctgcctccgacggccaccccaacgccagcagttgctcaaccggta
gctccgcctcccgttatcccagccaatattgccagtattctttccgcagccaaggctggc
gcttttgcgatggcaaacatgggaacaggaagcctcaatgaagtcatatcgcctgacaac
atcatcaatgcgttgtacgatgaccttgggccgccttgcgctgaatgtggcagacgattc
aagcgtaacatggagggcgacaaacaacgccgagctcacatggactggcatttcaaagta
aaacagcgaagcgcagaggcagagaagagaggaacgcatcgcagttggtacgttgaccaa
caggactggctgaaatcacgcgaagtggtcgacgtggaccacattgcgcaaccagagcct
tcggcagaggagcagtccaaggctgcctctgggccgatatacatgcgggtcccagaaccc
acgagcggtatcaacaatgtttgtcccatctgccaggagaagtttgagaacaagtggctc
gatactgcgcaggagtgggtgtggctggacgcggtgttggtacggaaccgcgcctatcac
gcctcgtgtcatgccgaggctacgagggaccgcgaaggcacgcctggcgctttaagacgg
acaccggagcctgtgctcgggaagagaaaggcggaagcgggcttgctatcaccaaagatt
cggacgcttaagacggcgtactag
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