Cordyceps militaris: CCM_02156
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Entry
CCM_02156 CDS
T03108
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cmt
Cordyceps militaris
Pathway
cmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCM_02156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmt03019
]
CCM_02156
03041 Spliceosome [BR:
cmt03041
]
CCM_02156
03009 Ribosome biogenesis [BR:
cmt03009
]
CCM_02156
03016 Transfer RNA biogenesis [BR:
cmt03016
]
CCM_02156
Enzymes [BR:
cmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CCM_02156
Messenger RNA biogenesis [BR:
cmt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CCM_02156
Spliceosome [BR:
cmt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CCM_02156
Complex C
U4/U6.U5 tri-SnRNP related factors
CCM_02156
Ribosome biogenesis [BR:
cmt03009
]
Eukaryotic type
Pre-60S particles
Helicases
CCM_02156
Transfer RNA biogenesis [BR:
cmt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CCM_02156
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
AAA_22
ATPase_2
Helicase_dom4_arc
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18164184
NCBI-ProteinID:
XP_006667372
UniProt:
G3J844
LinkDB
All DBs
Position
Unknown
AA seq
1093 aa
AA seq
DB search
MDEMFDVFEGNAGPASASEDERVPTKSRKDKTKKRKADEAMNGKAAAEPQKENATEDTEM
GETSDAAAAQEDDSDTPSQQDKKRRKKGDAAVPVMADNFETAQSREVAGAATFVPQDSSL
ILSHNIQHQVALPPDLDYEYVPLSEHKSPAEPARSYPFKLDPFQSLSVASIERDESVLVS
AHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDFEALFGDVGLMTGDVTINP
TASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYV
FLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFYPAGGSGARIVVDEKGNFNE
DNFNIVMKEVEEKKGADPNDINAKQTGKGKNKKTHKGGSDDGSDMSKIIRMTIRKSFNPV
IVFNFSKRECENMAISISKLSLNDDSEKAMVNKVFHSAIESLSEQDRDLPQIKNLLPLLV
RGIGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFSQITKWDGVKR
RPLTSSEYVQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGQQDRLNSAFYLGYNM
ILNLLRIEAISPEFMLERCFHQFQNAASVPSLERELMALQQERDGATIPDEATIKDYYQI
RQQLNTYTRDMRSVIQLPNYCLHFLQPGRPVQIYNPKDSPDNVAGGLDFGWGVIVNHYPR
RSTKLGEPEHIPQESYIIDVLLPISASSADIVPGQPAAEMPTGLVPANGDKNTIIAIVPC
LLTCIKAISQIRVFMPKDGLKTDKDRATVNKSLSEVKRRFPDGLPILDPFHNMDITDESF
QKLLRKIEVLESCLLANPLHLSPLLPSLWDQYHAKTLLTEKIKAKKKSIAKAHSITQMDE
LKSRKRVLRRLGFINDAEVVQLKARVACEISSTEGHELVLSELLFDRFFNELTPETCASI
LSCFIFDEKVEATALKEDLQKPFREVQAKARIVAKVSQECKLDVNEEEYAASLKWQLMET
VFAWAQGRPFSEICKMTNVYEGSLIRLFRRLEELLRQMAQAARVMGNDDLTKKFDESLQK
IRRDIVAAQSLYL
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atggacgagatgtttgatgttttcgagggcaacgccggccctgcgagcgccagcgaagac
gaaagagtgccgaccaagagccgcaaggacaagacgaagaagagaaaggcggacgaggcg
atgaacggcaaggctgctgctgaaccccagaaggagaatgcgaccgaagatactgagatg
ggtgagacgagcgatgccgcggcggcgcaagaagacgactcggacacgccaagccagcag
gacaagaagcgtcgcaaaaagggcgacgctgccgtgccggtcatggcggacaactttgag
acggcgcagtcgagagaggtggctggtgcggcgacttttgtcccgcaggactcctccctc
atcctatcgcacaacatccagcaccaggtcgcactgccacccgaccttgactatgaatac
gttccgctctccgagcataagtcgcccgccgagcctgcgcgatcgtaccccttcaagcta
gatccctttcagagtctgtcggttgcttccatcgagcgcgatgagagcgtcctcgtctcg
gcgcacacctctgcgggtaaaaccgtcgtcgccgagtacgccatcgcccagtgcctgaag
cgaaaccagcgagtcatctacaccagtccgatcaaggccctcagcaaccaaaaataccga
gactttgaagcccttttcggcgatgtcggcttgatgactggtgacgtgaccattaacccg
acggcgagttgcttggtcatgacgacggaaattttgcgatccatgctgtatcgcggctca
gagattatgcgagaagtcgcgtgggttgtgtttgacgagattcactacatgcgcgacaag
acacgaggcgtcgtttgggaggagacaattattatgctgcccgacaaggtccgatatgtg
ttcctgtccgccaccatccccaatgccttccaatttgcggaatggatcgccaagattcac
caccaagcctgccacgttgtgtataccgatttccgacctacaccgctgcaaaactacttt
tacccagccggcggctctggggcgcgcattgtcgtcgacgaaaagggcaacttcaacgaa
gacaacttcaatatcgtaatgaaggaggtcgaggaaaagaagggtgccgaccccaacgac
attaacgccaaacaaacgggcaaagggaagaacaagaaaacgcacaagggtggctccgac
gacggctccgatatgagcaagattatccgcatgacgatccggaaaagcttcaaccctgtc
attgtcttcaactttagcaagcgagagtgcgagaacatggccattagcatctcgaagctg
agcctcaatgacgattccgaaaaggccatggtcaacaaagtcttccacagtgccattgag
agtctgtcagagcaagatcgcgacctgccgcagatcaagaacctgctgcccctgcttgtg
cgcggcattggtgtccatcactctggtctcctgcccattttgaaggagactatcgagatt
cttttccaagaatccttgatcaaggtgctgtttgccaccgagaccttttccatcggcttg
aacatgcctgccaagactgtagtctttagccaaatcaccaagtgggacggcgtcaagcgt
cgcccgctcacgtcctccgagtacgtgcagatggctggccgtgccggtcgccgcggtctt
gacgcgcgaggtattgtaatcatgatgattgacgataaattggagcccgacaccgccaag
gaaattgttaccggccaacaggacaggctcaactcggccttttacctgggctacaacatg
attctcaacttgctcagaatcgaggccatctctcctgaattcatgctcgagagatgtttt
catcagttccagaatgcggctagcgttcccagtctcgagagggaactcatggcactgcag
caagagcgtgatggcgccactattcccgacgaagccaccatcaaggactactatcaaatt
cgccagcagctcaacacctatacgagagatatgcgatcggttattcagcttcccaactat
tgtctccacttcctacaacctggccgcccagttcaaatctacaaccccaaggattcgccg
gacaacgtggctggtggcctggactttggctggggcgtgattgttaaccactacccgcgt
cgtagcaccaagcttggcgaacccgagcacatccctcaagaatcgtacattatcgatgtc
ttgcttccgatatctgcttctagtgccgatattgttcctggacagccagctgccgagatg
cctaccggtcttgttcccgccaacggcgataaaaacacaatcattgccattgttccctgc
ttgctcacatgcataaaagccatcagccagatccgcgtctttatgcccaaggatggcctc
aagacggacaaggaccgcgcgacggtgaacaagtctctttccgaagtcaagcgccgcttc
cccgatggtctgcccatcctcgatccgtttcacaacatggatattacagacgagtcgttt
caaaagctccttcgcaagattgaagttcttgaatcctgtctgctagccaaccctctacac
ctgtcgcccctgctgccgtcactctgggatcagtaccatgccaagacactgcttacggag
aagatcaaggccaagaagaagtcgattgccaaggcccacagcatcacccaaatggatgag
ctcaagtcgcgcaagcgtgtgctgcggcgtcttggatttatcaacgatgcggaagtcgtg
cagctcaaggctcgcgttgcttgcgagatctcatcgaccgaaggtcacgaactggtgctc
tcggagctgctctttgaccgcttcttcaatgaactcacgcccgagacgtgcgcttccatt
ctcagctgcttcatctttgatgaaaaggtcgaggcgacggctttgaaggaagacctgcag
aagccgttccgcgaggtgcaggccaaggcgcgcatcgtcgccaaggtcagccaggagtgc
aagttggacgtcaacgaagaggaatacgcggccagcctcaagtggcagctgatggagacg
gtgtttgcctgggcccaaggccggccgttttctgagatttgcaagatgacaaatgtctac
gagggctccctgattcgcctcttccgccgcctggaagagcttctgcgccagatggcccag
gccgccagggtcatgggcaacgacgacctcaccaagaaatttgacgagagcttgcagaag
attagaagggacattgtggctgcccagagtctgtacctgtag
DBGET
integrated database retrieval system
