Cordyceps militaris: CCM_02289
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Entry
CCM_02289 CDS
T03108
Name
(RefSeq) mRNA cleavage and polyadenylation specificity factor complex subunit
KO
K06100
symplekin
Organism
cmt
Cordyceps militaris
Pathway
cmt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CCM_02289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmt03021
]
CCM_02289
03019 Messenger RNA biogenesis [BR:
cmt03019
]
CCM_02289
Transcription machinery [BR:
cmt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CCM_02289
Messenger RNA biogenesis [BR:
cmt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CCM_02289
U7-dependent histone pre-mRNA processing factors
CCM_02289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
18164316
NCBI-ProteinID:
XP_006667504
UniProt:
G3J8Y6
LinkDB
All DBs
Position
Unknown
AA seq
825 aa
AA seq
DB search
MPNGDLSLSQQIQQLNDARKHVLGDVKLYPGVVRGLIPSIGVSAPLELRRWGADFLAEAF
ATPVLPNGEKETLAPYVLATLELLVQKPDEDHYVLRGVIQTAASIYPLALRWIINNSYDT
VTWERMVAIKQRILQIWDTATPTVRICCIKFAQRVVLAQTVSSMGDHRYAGGLDISLDKI
PPNHQTLDPRPLEAEASGLLDRMLSALQESNDALVVDATLNCLSILIRTRPETSNRIINA
IFAFNPLNFAPSPLTPRGKVMVRSMEKTVRSLLVNLSRRDPHNPIVPRMQQHVERNMRLI
AEAFDDSGKKRALNAPQHDGNDAKRQRITAAQIQIPALGAGPHSLADLFSLVSNDGLKTF
DLSLVPPAMVTKLAVTILARLDSQLLAKAVDGVRDRLQTVANAPAAELNPNTAPLGVDDD
DDDYEPDFYQAEDTEQILNKLDSEPSGLDPIHLDDSLALRSFSLAQPQQITPELALSAGA
GTVEKVVDMMKSLEDSSAKKARAGFMRLAASSGTRDSWMTILSRLATRASAGLDEILVKG
EDDDNVSSTSLPNTIRELLYNYIMEDFRKHIDIAVSWLCEEWYNDRLLTQTNRDYPKSYE
KCTLRLLDGFLPYVHPQDKVLTRFLSEIPELNKEILSRVRRMCRDPLVVKLALTSLLYLV
LMRPPVKDMALDTVQDIWTELSVEIPTRVLGGGGCQSGRGRDIGQLCYCGVIAWTTGQDE
ERLDVQGDVDDGTKSVAAHGIVTGVSRGSFLQEQEEDFCTLERMDARWKSNLQPRHGYYS
QNTTPVPWGCMQHACLTREPRLEKHRKWAYARKRDPARHILVLEA
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgccgaacggggacctgtcgctgtcgcagcagattcagcagctcaacgatgcccgcaaa
cacgtccttggcgatgtgaagctgtaccctggcgtcgtgcgtggtctaattccgagcata
ggcgtttcggcgccgctggagctgcgccgatggggcgccgactttttggcggaagccttt
gctacgccggtgctgcccaacggcgaaaaggagacactggcaccgtacgtcttggcaacc
ctcgaattgctggtgcagaaaccagatgaggaccactacgtcctgcggggtgtcatacag
acagcggctagcatctacccgctggcgctgagatggataatcaacaattcatatgatacg
gttacctgggaacggatggtggccataaaacaaagaattctacagatttgggacacagcg
acgccgacagtcagaatctgctgtatcaagttcgcgcagcgcgtggtgctggcacagact
gtctcttccatgggagaccacagatatgccggtggactcgatatttctcttgataaaatc
cccccaaaccaccaaacactcgaccctcgacctctcgaggctgaagcatccgggctcttg
gaccgtatgcttagcgcattgcaggaatccaatgatgccctggttgtcgatgcgactctg
aattgcttatccattctcattcgaacccggccagaaacttccaaccgaattatcaacgcc
atcttcgccttcaaccctctgaactttgcaccgtcaccgttgacccccaggggcaaagtc
atggttaggtcaatggaaaagactgtgcgatcactcctggtcaacctgagcagaagggat
cctcacaaccctattgtgccacgaatgcagcaacatgtcgaacggaatatgcgcctgatt
gccgaggctttcgatgacagtggaaagaagagggcgctaaacgcaccgcaacatgacgga
aatgatgccaaacgtcaacgcatcacagcagcccagatccaaatccccgcccttggggct
gggcctcacagcctcgctgatctgtttagccttgtcagcaacgatggcttgaagacattt
gatctatcgctcgtaccgcccgcgatggtcacaaaattagcggttacaatccttgccagg
ctagattcacaactactggccaaggctgttgacggcgttcgtgatagacttcagacagtg
gcaaatgcgccggcggcagaactcaatcctaatacagcaccacttggagttgatgacgac
gacgatgactacgagccggatttctaccaggctgaagatacggagcagattctgaacaag
ctggacagtgagccctccggcctggaccctatccatctcgacgacagcctggcgctcaga
tcatttagcctagcccagccgcaacaaataacgccggaactggccctcagcgctggtgcc
ggcacggtagaaaaggttgtggatatgatgaagtcactcgaagactcgtcagcaaaaaag
gccagggctggtttcatgcggttggccgccagctctggcacgagggattcatggatgacg
attttgtcacgtcttgcgacgagagcatctgctggactagatgagattcttgtcaagggc
gaagacgatgacaacgtttcatcaacctcgctgccaaacacaatccgtgaacttttgtac
aattacataatggaagactttcgcaagcacattgacattgcggtatcatggctttgcgag
gagtggtacaacgaccgactactaacccagacaaaccgcgactaccccaagtcgtacgaa
aagtgcaccctgcgtctcctggatggcttcctgccatatgtgcacccacaagacaaggtt
ttgacgcgattcctgagcgaaatccccgagttgaataaggagattctgtctcgggtgaga
cgcatgtgtcgcgatccgctcgttgtcaaacttgccctgacgagcttgctatatcttgtt
ctcatgcgaccaccggtcaaggacatggcgttagatactgtgcaagatatttggacagag
ttatctgtcgaaataccgaccagggttcttggaggcggcggctgccagtcgggcagagga
cgggacatcggccaactctgctattgcggcgtgattgcgtggaccactggacaagatgaa
gagcggttggatgttcaaggtgatgttgatgatggtacgaagagtgtagcggcgcatggc
attgtgacgggcgtttctcgagggtcctttctacaggagcaagaagaagatttttgtaca
ttagagcgtatggacgcgcgctggaagagcaatctacagccacgccacggatactacagt
cagaatacgacaccggtgccatgggggtgcatgcagcatgcctgtttgacacgcgagccc
cggctggagaagcaccgaaagtgggcatatgcgaggaaacgagatcccgcaaggcatata
ttagttctcgaagcttga
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