Cordyceps militaris: CCM_03173
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Entry
CCM_03173 CDS
T03108
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cmt
Cordyceps militaris
Pathway
cmt03013
Nucleocytoplasmic transport
cmt03015
mRNA surveillance pathway
cmt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CCM_03173
09122 Translation
03013 Nucleocytoplasmic transport
CCM_03173
03015 mRNA surveillance pathway
CCM_03173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmt03019
]
CCM_03173
03041 Spliceosome [BR:
cmt03041
]
CCM_03173
Enzymes [BR:
cmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCM_03173
Messenger RNA biogenesis [BR:
cmt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CCM_03173
Spliceosome [BR:
cmt03041
]
Complex C
Other components
EJC/TREX
CCM_03173
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CCM_03173
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF4844
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18165200
NCBI-ProteinID:
XP_006668388
UniProt:
G3J973
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MACAGYHSFLCILSLSRLFRRHVCFLAVSSSASKFPPPRAAFSICCLAYWEALHAGARAA
ADGEHVSGPWLAPARAADRGVARPALDEQRVAVPADAALHHRTRPDQHLAGDGAHVGEKT
SRHVAQGALLLFLVVVGGSVARWLGWEIRSGGGGVVVPWPAAVGCCSYAVGCVVDSAGLQ
GSGRKKGSGLVEPTPLSSPQRSVRKRSLSIFREFRSELISERSVAIYPHETPLIMSHEED
LIDYSDEEIGANETANTATKKGELAANSNVDKKGSYVGIHSTGFRDFLLKPELLRAIGDC
GFEHPSEGTKTEEASSRLEESKTVDDYIDGLPAFRIDAVDLGRSATSPGGRTSRSKTSSR
PLEKSGKANPVDVQWHIDMDLVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEP
VNGEVSVVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDMETLKNKDTCPH
IIVGTPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPHQKQVMMF
SATLSEEVKPICKKFMQNPTEHYVDEDTKLTLHGLQQYYIKLDEKEKNRKLNDLLDELQF
NQVIIFVRSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVF
GRGIDIERINLAINYDLSADASSYLHRVGRAGRFGTKGLAISFISSEDDQKVLGEIEKRF
EVALPEFPKEGVDASTYMAS
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcgccgggtatcattcgtttctatgcattctctctctctctcgtctcttccgc
cgccacgtctgcttcctggccgtgtcctcctccgcgagcaagtttcctcctccgcgcgcc
gccttttctatttgttgtctcgcctactgggaagcgcttcacgccggcgcacgcgcggca
gcggacggtgagcacgtcagtggcccatggcttgcgcctgctcgcgctgccgaccgaggc
gtcgcaagaccggccctcgatgagcagcgcgtcgcagtaccggcagacgctgcgcttcat
cacaggacacggccggatcagcaccttgcgggtgacggcgcgcatgtcggcgagaagact
tcgcgacatgttgcgcagggcgcgctgctgctgtttctggtcgtcgtcggcggctccgtg
gctcgctggctgggctgggagatccgaagcggcggcggcggtgtcgtcgtaccctggcct
gctgctgttggctgctgctcgtacgctgttgggtgtgtcgttgacagtgctgggctgcag
ggaagcggtcgcaagaaaggcagcggcttggtagagccgacaccactttcgtcgcctcaa
cgatctgtgcgcaaacgcagcctgtcgattttccgagaatttcgctcggaattgatctcc
gaaagatccgtcgctatctacccacacgaaacaccgctcatcatgtctcacgaggaggat
ctcattgactactccgacgaggagattggtgccaacgagaccgccaacacagcgactaaa
aaaggcgagcttgccgccaatagcaatgtcgacaagaagggtagctacgtcggcatccac
tccaccggtttccgtgactttctgctgaagcccgagcttctgcgcgccatcggagactgc
ggtttcgagcatccatcggagggaacgaagacggaagaggcaagttcgcgcttggaagaa
agcaagactgtagatgactatattgacggccttccggcctttcggatcgacgccgtggat
cttggccgaagcgcgaccagtcctggtggtagaacgtctaggtccaagacgtcaagcaga
ccgttggagaaaagcggcaaggcaaaccccgttgatgtgcaatggcacattgacatggat
cttgtccaacaaacctgcattccccaggctcttctcggtggtgatatcatctgccaggcc
aagtctggtcttggcaaaactgccgtctttgtgctcgcgaccctgcagcaggttgagcct
gtcaacggcgaggtttcggttgtggtcatgtgccacactcgcgagctggcctaccagatc
cgcgatgagtacaaccgtttcagcaagtacatgcccgatatcaagaccggtgtcttctat
ggtggtactcccatcaagaccgacatggagaccctcaagaacaaggacacttgccctcac
atcattgttggcactcccggccgtctcaaggctcttgtccgcgacaaagctctgcgcctt
ggcagcgttcgcatctttgttctcgacgagtgcgacaagatgctcgaccaacccgatatg
cgcactgatgtgcaggacgtattccgcgctactccccaccagaagcaggtcatgatgttc
tccgcgactctgtcggaggaggtcaagcctatctgcaaaaagttcatgcagaaccctacc
gagcattacgttgatgaggacaccaaacttactctgcacggtctgcagcagtactacatc
aagcttgatgagaaagagaagaatcgcaagctcaatgacctcctcgatgagctgcaattc
aaccaggtcatcatctttgtaaggagtactgtccgcgctacggagctggacaagctgctg
cgcgaatgcaacttcccctcgattgctgtccactcgggcgtcagccaggaggagcgcatc
cgtcgatacaaggagttcaaggaattcaagaagcgtatctgcgttgccactgacgtattt
ggtcgcggcattgacattgagcgtatcaacctagccatcaactacgacctgtccgctgat
gccagctcgtaccttcaccgtgtcggtcgtgctggtcgcttcggcaccaagggtctcgcc
atttcgttcatcagcagcgaggatgaccaaaaggttcttggcgagattgaaaagcgcttt
gaggtcgctcttcccgagtttcccaaggagggtgttgatgccagcacctacatggcttct
tag
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integrated database retrieval system
