KEGG   Cordyceps militaris: CCM_06146
Entry
CCM_06146         CDS       T03108                                 
Name
(RefSeq) WD40 repeat-like-containing domain
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cmt  Cordyceps militaris
Pathway
cmt03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CCM_06146
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cmt03041]
    CCM_06146
Spliceosome [BR:cmt03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    CCM_06146
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 PRP4 Beta-prop_WDR36-Utp21_1st WDR90_beta-prop_4th Beta-prop_EML Beta-prop_TEP1_C Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_WDR90_POC16_2nd Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_RIG_2nd WD40_RFWD3 Tricorn_2nd Beta-prop_RIG_1st Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_Vps41 WDR54 Beta-prop_VPS8 Nbas_N Beta-prop_DCAF12 WD40_like
Other DBs
NCBI-GeneID: 18168161
NCBI-ProteinID: XP_006671350
UniProt: G3JIZ2
LinkDB
Position
Unknown
AA seq 517 aa
MMHPSRQARVDDEPMSGIALEDLPEDHDYNIPTDVAGGTSEKASAILGQLNRKRLAATIA
VPTDDGRVRAKLREMGEPITLFGEGPGDRRDRLRELMTLQVEQAGGQAADVTMEDAEEEE
DEAEEEFYSRGGPALLEARINMAKYSLPRAKRRTAYQRLEAKIPLRTQVKFRKQMKERLA
GFELQGSQIVGERNVSMTRLSPNGELVAVGNWGGQIKILEVPTLSEKMSYRGHTNKISGI
SWSPGATLPESNVSSDSVNFASGGAEGLVHLWSLNQDTPLATLQGHTQRVCRVEFHPSGR
YLASASEDTSWRLWDVETSKELLLQEGHSRGVYAVSFNNDGSLIASAGLDSIGRIWDVRS
GRTVMILDGHQDGHIKPIYALDWSADGHRVLTGSADGWIKCWDVRKVQKTGGIGAHTSAI
SDVRWFKGLDEPLDGVPPPLDDKGVQIPKKTGTFVVSAGFDRTVKIFSADDWSLVQTLSG
HTGPVTSADYSRDGKWIVSGGHDRTVKLWGRNDGEAA
NT seq 1554 nt   +upstreamnt  +downstreamnt
atgatgcacccgtcaaggcaagcgcgcgtcgatgacgagcccatgtcgggcattgcgctc
gaagatctccccgaagaccatgactacaatattcccaccgacgttgccggcgggacatcc
gaaaaggcgtccgccatcctcggccagctcaaccgcaaacgtctcgccgccacgatagcg
gtcccgaccgacgatggacgtgtacgcgccaagctccgcgagatgggcgaacccatcacc
cttttcggcgagggcccgggcgaccgacgagaccgcctgcgcgagctcatgacgctccag
gtcgagcaagctgggggtcaggcggccgatgtgaccatggaagacgccgaagaggaggag
gacgaggcggaggaggaattctactcgcgcggtggcccagcgcttctcgaagcacgcatt
aacatggccaagtactcgctgccgagggccaagcgacggacggcttaccaacgtctcgag
gccaagattccgctgcgcacgcaagtcaagtttcgcaagcagatgaaggagcggctggct
ggatttgagctacaaggaagccagattgtcggcgagcgcaacgtgagcatgacgcgtcta
tcacccaacggcgagttggtcgcagtcggaaactggggtgggcaaatcaagatcctcgag
gtgccgactctcagtgagaagatgtcatatcgcggacatacaaacaagattagcggcatc
tcctggtcacccggtgctactctaccagagtccaacgtatcgtctgactcggtcaacttt
gcgtctgggggtgccgaagggttggtccacctctggtcgctgaatcaagacacgccactc
gccacgctccaaggccacacgcagcgcgtatgtcgcgtcgagttccacccgtcgggacgc
tatctcgcatcggcctcggaagacacgtcctggcggctctgggacgtggaaacaagcaag
gagcttctgctacaagagggccactcgcgcggcgtctacgccgtcagcttcaacaatgac
gggtctctaatcgccagtgccggactcgacagtatcggacgaatatgggatgtacgatca
ggccggaccgtcatgatccttgacggccatcaggacggccacattaagcccatttacgcg
ctggactggagtgccgacgggcaccgcgtgctcaccggctctgccgacggctggatcaag
tgctgggatgtccgcaaggtccagaaaacgggcggcatcggcgcgcacacaagcgccatt
tccgacgtgcgctggttcaagggcctcgacgaaccactggacggtgtgccgccgccgctg
gacgacaagggcgtccagatccccaagaagacgggcacgtttgtggtgtcggcgggcttt
gaccgcaccgtcaagatcttttccgcggatgactggagtttagtccagacgctcagcggg
cataccggccccgtcacctcggccgactacagcagggacggtaaatggattgtcagcggc
ggacacgaccgtacagtcaaattgtggggacgaaacgatggcgaggctgcataa

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