KEGG   Cordyceps militaris: CCM_06882
Entry
CCM_06882         CDS       T03108                                 
Name
(RefSeq) polymerase (RNA) II (DNA directed) polypeptide D
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
cmt  Cordyceps militaris
Pathway
cmt03020  RNA polymerase
cmt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cmt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CCM_06882
  09124 Replication and repair
   03420 Nucleotide excision repair
    CCM_06882
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmt03021]
    CCM_06882
   03400 DNA repair and recombination proteins [BR:cmt03400]
    CCM_06882
Transcription machinery [BR:cmt03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     CCM_06882
DNA repair and recombination proteins [BR:cmt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CCM_06882
SSDB
Motif
Pfam: RNA_pol_Rpb4 Spexin DUF6036 Mu-like_Pro
Other DBs
NCBI-GeneID: 18168893
NCBI-ProteinID: XP_006672083
UniProt: G3JL88
LinkDB
Position
Unknown
AA seq 143 aa
MSANKTSRPKPPPPGTEEASTILNLGEFQNVDTLTLSEASLVLNALVAKRRNDRKNVNET
EMLSQTLSYLDHFARFTQKENVEAVERLLSTHKDLAKFERAQLGSLCCESADEAKTLIPS
LTEKIKDEDLQELLEEISKLQNR
NT seq 432 nt   +upstreamnt  +downstreamnt
atgtcggccaacaagacgtcacggcccaagccgccgcctcccggcaccgaggaagcctcc
acgatactgaacctcggcgagttccaaaacgtcgacacactcacgctgtcggaagcctcg
ctggtgctgaatgcgctggtcgcgaagcgtcgcaacgaccgcaaaaacgtcaacgagact
gagatgctgagccagaccctcagctacctcgatcactttgcgcggttcacgcaaaaggaa
aacgtcgaggccgtcgagcggctgctcagcacgcacaaggacctggccaagtttgagcgc
gcacagctgggatcgctgtgctgcgaaagcgccgacgaggccaagacgctgatcccctcg
ctgacggaaaagatcaaggacgaggacctgcaggagctcctcgaagagatttcgaagctg
caaaacaggtaa

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