Chlamydia muridarum Nigg: TC_0589
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Entry
TC_0589 CDS
T00028
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cmu
Chlamydia muridarum Nigg
Pathway
cmu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TC_0589 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmu03021
]
TC_0589 (rpoB)
03400 DNA repair and recombination proteins [BR:
cmu03400
]
TC_0589 (rpoB)
Enzymes [BR:
cmu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TC_0589 (rpoB)
Transcription machinery [BR:
cmu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TC_0589 (rpoB)
DNA repair and recombination proteins [BR:
cmu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TC_0589 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AAF39421
UniProt:
P56869
LinkDB
All DBs
Position
complement(705075..708833)
Genome browser
AA seq
1252 aa
AA seq
DB search
MFKCPERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKS
YNEATILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLTDETGIKEEEVYMGTIPIM
TDKGTFIINGAERVVVSQVHRSPGINFEQEKHSKGNVLFSFRIIPYRGSWLEASFDINDL
IYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFAVEEHSLRSEKDFVALVGKVLADN
VVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAVGADENHPIIKMLAKDPTDSYEAA
LKDFYRRLRPGEPATLANARSTIMRLFFDSKRYNLGRVGRYKLNKKLGFPLDDETLSQVT
LRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARMEKIVRE
RMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRLSALGP
GGLNRERAGFEVRDVHSSHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRVVR
DGIVTDEIEYMTADVEEDCVIAQASAELDEYNMFKDSVCWARYKGEAFEADTSTVTHMDV
SPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAKDSGAI
VVAQEDGVVEYVDSYEIVVAKKNNPTLKDTYPLKKFLRSNSGTCINQTPLCSVGDVVTHG
DVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISEKLIKQDAYTSIYIEEFELTA
RDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPKSETELAPEER
LLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEAVHLKDLQKE
YKSQLAQLKMEHREKLGALLLNEKAPAAIIHRRSADILVQEGAVFDQETIELLERESLVD
LLMAPCDMYDVLKDILSNYETAVQRLEVNYKTEAEHIKEGDADLDHGVIRQVKVYVASKR
KLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLG
YAAKTAGIYVKTPVFEGFPESRIWDMMIEQGLPEDGKSYLFDGKTGERFDSKVVVGYIYM
LKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILT
VKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVVDA
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagtgcccggagcgggtcagcatcaaaaagaaagaagatattttagatcttcct
aatcttgtcgaagttcaaatcaagtcgtataagcagtttcttcaaattgggaagctagct
gaagagcgagaaaacattggtttagaagaagtcttcagagaaattttccctatcaaatca
tacaatgaagctacgattttagagtacctctcttataacttaggagtgcccaaatactcc
ccagaagagtgtattcgtcggggaattacttatagcgttaccttaaaggttcgtttccgt
ttgactgatgaaacgggaattaaggaagaagaagtctatatgggaactattcctattatg
actgacaagggaacctttattatcaatggagcagaaagggtcgttgtttctcaagttcac
cgttctccagggattaactttgagcaggagaaacattctaaagggaatgttttgttctct
tttagaattattccttatcgaggaagttggttagaggcttcttttgatattaatgacctc
atctatattcacattgataggaaaaaacgtcgtagaaagattttagctatgacgtttatt
cgagcattggggtattcgacagatgctgatattatcgaagaatttttcgctgtagaagag
cactctctgcgttcagaaaaagattttgttgctttagttggtaaagttttagcagacaat
gtagtagatgcggattcttcgttagtttacgggaaggctggagagaaactcagtactgct
atgctgaagcgcattttggatgctggggtacaatctttaaaaattgccgttggagctgat
gaaaatcatccaattatcaagatgttggcaaaagatcctacagattcttacgaagctgct
cttaaagatttttaccgcagattgcgtccaggtgagccagcaactttagctaatgctcgt
tctacgattatgcgtctatttttcgattctaaacgttataatttaggtcgtgttggacgt
tataaattaaataaaaaattagggttccctctagatgacgaaacactgtctcaagtgact
ttgagaaaagaagatgttattggagctctaaagtatctaattcgtttgcgaatgggtgat
gagaagacgtctatcgatgatatcgaccatttggcaaaccgacgtgtccgttctgttgga
gaattaattcagaatcattgccgatcaggattggctagaatggaaaaaatcgttcgagaa
agaatgaatctcttcgatttttcttccgatacgttaactcctggaaaaattatttctgcc
aaagggctagttagtgtcttgaaagatttctttagccgttcccagttgtcccaatttatg
gatcaaacgaatcctgttgcggaattgacacataagcgtcgattatctgcattaggacct
ggaggattgaatagggaaagagccggttttgaagttcgagacgttcattccagccactat
ggtagaatttgtccaattgaaactccagaaggaccaaacattggattgatcacttccttg
tcctcttttgctaagatcaatgaatttggctttattgagactccttatcgcgttgtgcgt
gatggcatcgtaacagatgaaattgagtacatgactgctgatgttgaagaggattgtgtc
atcgctcaggcatctgcggagcttgatgaatataacatgtttaaggattctgtatgttgg
gctcggtataaaggagaagcttttgaagcggatacgagtacggtcacacatatggacgtc
tctcctaaacaattggtgtctgtagttaccgggcttattcctttcttagagcatgacgat
gctaaccgagctcttatgggatcgaacatgcaacggcaggctgtgcctttattgaaaacg
gaggctgctattgtcggaactggattagaaggacgtgcagctaaggattctggagctatt
gttgttgctcaagaagatggggttgttgaatatgtcgacagttacgagattgttgtagcg
aagaaaaataacccaacgctgaaagatacatatccacttaaaaagttcttaagatctaac
tctggaacatgcatcaaccagactccgttatgttctgtcggagatgtagtgacacatggg
gatgttttggctgatggacctgcaacggataaaggagaacttgcacttggtaaaaacgtg
ctagtagcctttatgccttggtatgggtacaacttcgaagatgcgattatcatctctgaa
aaattaatcaaacaggatgcctatacttctatctacatagaagagtttgaactgacagcc
cgagatactaaacttggtaaagaagaaatcacaagagacattccgaatgtttctgaggaa
gttttagcaaatttaggagaagacggaattgtccgtattggtgctgaagttaagcctggg
gatattcttgttggtaaaatcactccaaaatctgaaactgagttagctcctgaagaacgc
ttattgcgagctatttttggtgaaaaagctgctgatgttaaagatgcttctttaacggtt
cctcctggtacagaaggggtcgtgatggatgttaaagtcttcagtagaaaagatcgcttg
tctaagagtgatgatgaactggttgaagaggctgtgcatcttaaagacttgcaaaaagag
tataagagccagcttgctcagttgaagatggaacatagagagaagttgggagctttattg
cttaatgagaaagctcctgcggcaatcattcatcgacgctctgcagatattttagtgcag
gaaggggctgtttttgatcaagaaactatagagcttttagaaagagagtctttagttgat
ctcctaatggctccttgtgatatgtacgatgttttgaaagacattctttctaactatgaa
acagctgttcagcgtttggaagtaaattacaagacagaggctgaacacataaaagagggt
gatgccgatttagaccacggggtaatccgacaagttaaggtctatgtagcctccaaacga
aaattacaagttggggataaaatggctggacgtcacggaaacaaaggggttgtttccaag
attgttcctgaagcggatatgcccttcttggcgaatggagagacggtacagatgatcttg
aacccattaggggtgccttctcgaatgaaccttggacaggttttggaaacgcatctggga
tatgctgcaaaaacagcaggtatctatgttaagactcctgtctttgaagggttccctgaa
tcgcgtatttgggacatgatgatcgagcaaggcttacctgaagatggtaaatcctactta
ttcgatggtaagactggagagcgtttcgacagtaaagtggttgttggatacatctatatg
ttgaaattgagccacctgattgcagataagatccatgctcgttcgataggaccttactct
ctcgttacccaacagcctctcggaggaaaagctcagatgggaggacaaagattcggggag
atggaagtttgggccttggaggcatatggagtagctcatatgttacaagagatcctaacc
gtgaaatctgacgatgtttcgggaagaactcgtatctatgagtcaatcgttaaaggagaa
aacttacttcgttctggaacgcctgagtcgttcaatgttttgattaaagaaatgcaaggt
ctagggctcgatgttcgccctatggtagtagatgcttaa
DBGET
integrated database retrieval system
