Chlamydia muridarum Nigg: TC_0905
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Entry
TC_0905 CDS
T00028
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cmu
Chlamydia muridarum Nigg
Pathway
cmu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cmu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TC_0905 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmu03021
]
TC_0905 (rpoD)
Transcription machinery [BR:
cmu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TC_0905 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
TatA_B_E
LpqV
DUF3685
Motif
Other DBs
NCBI-ProteinID:
AAF39698
UniProt:
P56835
LinkDB
All DBs
Position
complement(1047111..1048826)
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AA seq
571 aa
AA seq
DB search
MRMDTLDSQAADAAQEEEIQRKLEELVTLAKDQGFITYEEINEILPPSFDSPEQIDQVLI
FLAGMDVQVLNQADVERQKERKKEAKELEGLAKRSEGTPDDPVRMYLKEMGTVPLLTREE
EVEISKRIEKAQVQIERIILRFRYSTKEAVSIAQYLINGKERFDKIVSEKEVEDKTHFLN
LLPKLISLLKEEDSYLEERLLALKDPALSKQDQAKLNDELEKCRIRTQAYLRCFHCRHNV
TEDFGEVVFKAYDSFLQLEQQINDLKVRAERNKFAAAKLAAARRKLYKREVAAGRTLEEF
KKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEK
FEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEP
TPEELGEELGFTPDRVREIYKIAQHPISLQAEVGDSGESSFGDFLEDTAVESPAEATGYS
MLKDKMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKM
RHPIRSKQLRAFLDLLEEEKTGSGKIKSYKN
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatggatacgctagatagtcaagctgctgatgcagcccaagaagaagaaatccaa
agaaagttagaagagctagtcactcttgctaaggatcaagggttcatcacgtatgaagaa
attaatgaaattcttcccccttctttcgattcgccagaacagatagatcaagttttaatt
tttctggcggggatggacgttcaagtcttaaaccaagcagacgtagagcggcagaaagaa
agaaaaaaagaagctaaagagctagaagggttggctaagcgttctgagggaacgcctgat
gatccagtgcgtatgtatctgaaggaaatgggtacagttcctcttcttacaagagaagag
gaggtggagatttctaaaaggatagaaaaagctcaggtacaaatagaaagaattatttta
cgctttcgttattcgactaaagaagcggtttctattgcgcaatacttaattaatggtaag
gaacgatttgataagatcgtttccgaaaaagaggtggaagataagacacattttcttaat
cttttgccgaagttaatctctttgctgaaagaagaggactcttacttagaagagcggctt
ttggctttgaaagatccggcactgtccaagcaagatcaagcaaagttgaacgatgagctt
gaaaaatgccgtattcgaacacaagcttatctgagatgttttcattgtcgtcacaatgtc
acggaagattttggagaagttgtttttaaagcttatgactcgttcttacagttggaacaa
caaatcaatgatttaaaggttcgtgctgaaagaaataagtttgctgcagcaaaactagct
gcagcccgacgcaagctttacaaacgagaagttgcagcgggacgtactcttgaagagttt
aaaaaagatgtgcggatgttgcagcgttggatggataaaagccaggaagcaaagaaagag
atggtggaatccaacttacgtttggtgatctctatcgcgaaaaaatataccaaccgaggg
ctgtctttcttggatttgattcaagaaggaaatatgggcttaatgaaagctgttgaaaaa
tttgagtatcgccggggttataaattttcaacttatgccacttggtggattcgtcaggct
gtgacgcgagctattgccgatcaggcaagaaccattcgaattcctgttcatatgatcgag
accattaataaggtgcttcgtggagccaagaaattaatgatggaaacaggaaaagagcct
acgcccgaagaactcggagaggaactaggtttcactccagaccgtgttcgagaaatttat
aagatcgctcagcatccgatttctttacaggctgaggttggagatagtggagaaagctct
tttggagatttcttggaagatacagctgttgaatctccggcagaggcaacaggctactcc
atgttgaaagacaaaatgaaggaagtgctaaaaacgcttactgatcgcgaacgttttgtt
ttgatccatcggtttggccttttagatggccgtcccaaaactttggaagaggtaggctcc
gcgttcaacgtgacacgagagcggattcgacaaatcgaagccaaagctttgcgaaaaatg
cgtcatcctatccgttccaaacagctacgagcattcttggatttattggaagaagagaag
actggttcgggcaagattaagagttataagaattaa
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