Citricoccus muralis: P8192_06080
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Entry
P8192_06080 CDS
T08998
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cmua
Citricoccus muralis
Brite
KEGG Orthology (KO) [BR:
cmua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmua03019
]
P8192_06080 (hrpA)
Enzymes [BR:
cmua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
P8192_06080 (hrpA)
Messenger RNA biogenesis [BR:
cmua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
P8192_06080 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
HA2_N
AAA_30
T2SSE
nSTAND3
FtsK_SpoIIIE
ResIII
AAA_25
SRP54
SLFN-g3_helicase
PhoH
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WFP17668
LinkDB
All DBs
Position
complement(1324632..1328714)
Genome browser
AA seq
1360 aa
AA seq
DB search
MSDSAAQPNHGSAPAPSRSITFPEHLPVSARRDDIIAALAEHQVIIVAGETGSGKTTQLP
KMCLALGLDEHGIIGHTQPRRIAARSVAERIAEELGEDIGSTVGYQVRFTAETSEDTRVK
VMTDGILLAEIPHDPLLKRYSVIIIDEAHERSLNIDFLLGYLKRILPQRPDLKVIVTSAT
IDPESFAAHFATGVDAEGEPEPAPIIEVSGRTFPVEIRYRPLTESDSPHGDDDAAERGGG
HDEESRDPVDAVGDAVEELAAEPDGDILVFFPGEREIRDAAEALAPRLAAHPRLSTTEIL
PLYGRLSMAEQHRVFRRGGKRRIVLATNVAETSLTVPGIKYVVDTGTARISRYSHRTKVQ
RLPIERISQASAAQRSGRSGRTSDGIAIRLYSQEDFEARAEFTDPEILRTNLAAVILQML
HLGVAKTPKDIADFPFLQPPDTRQITDGATLLTELGALNSGAPGSGSQGTITSLGRSLAR
LPVDPRLGRMILAAHELGCTREVMVLAAALTIQDPRERPTEHRAQADELHARFRDDASDF
SSVLNLWSYLRTQQKELSGNQFRKMCRAEFINYLRVREWQDLVQQLRQLASQIGIKVSPG
PLDAVAMHEPVHRALLTGLLSHIGSWDERKREYQGARGTRFAVFPGSGLFKKRHAFVMAA
ELVETSRLWARMVAAIEPEWIEQAAGSLAKHTYSEPHWSRRQGAAMARERVTVLGVTIAV
DRLVRFSRVDRTEARAMFIQHALVEGDWQSRHHFVARNEQALREVEELETRLRRRDLRIS
DEDLFRFYDERVPASVVSQRHFDSWWKKERHRNPELLDLDPKALIQAEPEDLDTDLFPTV
FTHPTGSGDVELALDYAFNPSVTTEGSGTDGVTVTIPVVLLNQMDPQRFAWLIPGLRVEL
VTALIRALPKAVRKQVVPAPDVAARAVAILDAEFDPAHDELLASLSTVLRRLKSVVISKD
QWNPAAVPEHLRMTYRVVDDRSAVVGVGENLEDLQARLSNANRTAIAASLAEAGLATRDG
TRGPAQSSAPRPTPGAAAQRGAQKRSKGNTNSRAGTPAYTPRHGLTSWDVGDLSRSVKTS
VPAGSGTQEITGYPALRAETLEDGSPAAGLIITRTTGEQRQVHRRGVTALLRATVPNPQR
YVLDHLNHQEKLTFSQSPHGSVDSLIADCTTAAIDALLPADDALPFTERDFSALGEQVRA
ELIEKVFAVTRVVEQSLRLAAQVRKRVKATRSLSLAAAVSDLRAQVDQLIYPGFVAETGW
RHLQHLPRYLQAMLTRLDRLDAGGQLQRDGLNMQVVQGLEDQFDDAVAAVPESIPVPNEL
AEVRWLIEELRVSFFAQNLGTAVSVSEKRVRQALQGAQRS
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattccgcagcccagccgaaccacggctccgcccccgccccgtcgcgcagcatc
acctttcccgagcatctgcccgtctctgctcggcgtgacgacatcatcgccgccttggcc
gagcaccaggtgatcatcgtggccggcgagaccggatcgggcaagaccacccagttgccc
aaaatgtgtcttgccttgggcctggacgaacacgggatcatcggacacacccagccgcgc
cgcatcgctgcccgctcggtggccgaacgcatcgccgaggagctcggtgaggacatcgga
tccaccgtgggataccaggtgcgttttaccgccgaaacgtccgaggacacccgggtcaag
gtgatgaccgacggcattctgctggccgagatcccgcatgatccgctgctaaagcgctac
tcggtgatcatcatcgacgaggcccacgagcgcagcctcaacatcgacttcctcctgggc
tatctcaagcggatcctgccgcaacgcccggacctgaaagtcattgtcacctcggccacg
atcgacccagaatcgttcgccgcgcacttcgccaccggcgtggatgcggaaggcgaaccg
gaaccggcacccattatcgaagtctccgggcgaacctttccagtggagatccggtaccgg
ccgctcactgagtctgattctcctcacggtgacgacgacgctgcagagcgtggcggcggc
cacgacgaggaatcccgcgatccggtggacgccgtgggcgacgccgtcgaggagctcgcc
gccgaaccggatggcgacattctggtgttcttcccgggcgagcgcgaaatccgcgatgcg
gccgaagcgctggcgccgcggctggcagcacatccgcgcctgtccaccaccgagattctg
cccctgtacggtcggctgtcgatggccgagcagcaccgggtgttccgtcgcggaggcaag
cgacggatcgtattggccaccaatgtggcggagacgtcgctgaccgtacccggcatcaaa
tatgtcgtcgacaccggcaccgcccgcatttcccggtactcccaccgcacgaaggtgcag
cggctgcccatcgaacgcatctcccaggccagcgcggctcagcgttccgggcggtccggg
cgtaccagcgacggcattgccatccgcctgtactctcaagaggatttcgaggcgcgcgcc
gagttcaccgatccggagattctgcgcaccaacctggccgccgtcatcctgcagatgctg
cacctgggggtggcaaaaaccccgaaagacatcgccgacttccccttcctacagcccccg
gacacccgccaaatcaccgacggcgccacgctgctcaccgaactgggcgcgctgaactcg
ggagcacccgggtcagggtcccaaggcaccatcacctccctgggccgttccctggcccgg
ctacccgtggatccgcgactgggccgaatgatcttggccgcccacgagctgggctgcacc
cgcgaggtcatggtcctcgccgccgcgctgaccattcaggatccccgcgagcgtcccacc
gaacaccgggcccaggccgatgagctccacgcccggttccgagacgatgcctcggatttc
tcctcggtcttgaatctgtggtcgtatctgcgcacccagcagaaggagctctccggcaac
cagttccgcaagatgtgccgggccgagttcatcaactacctgcgggtgcgcgaatggcag
gacctggtgcagcagttgcgccagttggcctcacagatcggcatcaaggtctcccccggc
cccctcgacgcggtggcaatgcacgaaccagtgcaccgggcgctgctcactggactgctc
tcccacattggctcctgggatgagcgcaaacgggaataccagggagcccgcggcacccgg
ttcgcagtgttccccggctccgggctgttcaagaagcgccacgcctttgtgatggccgcc
gagctggtggaaacctcccggttgtgggcccgcatggtggccgcgatcgaaccggaatgg
atcgaacaggccgccggctccctggccaagcacacctactccgaaccacactggtctcgt
cgtcagggtgccgccatggcccgcgagcgcgtcaccgtcctgggggtgaccatcgcggtg
gaccggctggtgcgtttctcccgtgttgaccgcaccgaggctcgcgcgatgttcatccag
cacgcgctggtggagggtgactggcagagtcgacaccatttcgtggcgcgcaacgaacag
gcgctacgcgaggtagaggagttggaaacccgactgcgccgtcgggacctgcgcatcagc
gacgaggacctgttccggttctacgacgagcgggttccggcctccgtggtctcacagcgt
cacttcgattcctggtggaagaaggaacgccaccggaatcctgagttgctggatctggat
ccgaaggcactcatccaggccgagccagaagacctcgacaccgatctctttccgaccgtg
ttcacccatcccaccggctcgggtgacgtggagctcgcactggactacgcgttcaatccc
agcgtgaccacggaaggatccggcaccgacggggtgacggtcaccatcccggtggtgttg
ctcaaccagatggacccgcagcgcttcgcttggctgatcccgggcctgcgcgtcgaactg
gtcaccgcactcatccgtgccctgcccaaggcggtgcgcaaacaggtggtgcccgctccc
gacgtcgccgcgcgcgccgtagcgatactcgacgccgagttcgacccggcccatgatgag
ctccttgcgtcgctgagcaccgtactgcgtcggctgaaatcggtggtgatcagtaaagat
cagtggaatccggcggcggtgccggagcatctgcgcatgacctaccgcgtggtggatgat
cgctccgcggtggtcggcgtgggcgagaatctcgaagacctgcaggcccggctttccaat
gccaaccgcaccgccattgccgcatccctagccgaggcgggcctggcgacgcgcgacggc
acccgtggcccagctcagtcttccgcgccccgaccgaccccgggcgctgcggctcagcgc
ggcgcacagaagcggagcaagggcaacaccaacagccgagccgggacgcccgcctatact
ccgcggcacgggctgacctcctgggacgtgggcgatctctcgcgcagcgtgaaaacgtcg
gtccccgccggctccggcacccaggaaatcaccggctacccggcgctgcgcgcggaaacc
ctcgaggatggttccccggcggcggggctgatcatcacccgcaccacaggcgagcagcgc
caggtgcaccgccgcggggtgaccgccctactgcgggccaccgtgccgaatccacagcgg
tacgtgcttgatcacctcaaccaccaggagaagctcaccttttcccagagcccgcacggc
tccgtcgattcgttgattgcggactgcaccacggcagctatcgacgcgctgttgcccgct
gatgatgcgctgccgttcacggaacgggacttctcggccctaggtgagcaggtgcgggcc
gagctgatcgagaaggtcttcgcggtcacccgcgtcgtcgagcagtccttgcggctggca
gctcaggtgcgcaaacgggtgaaggccacgcgctcgctatcgctggcggcggcggtgtcg
gatctgcgtgctcaggtggatcagctgatctatccgggattcgtggcggagacgggctgg
cggcatctacagcatctgccccggtacttacaggccatgctcacccggttggaccggctg
gatgccggcggtcagttgcagcgcgacgggctgaacatgcaggtggtccaggggctggaa
gatcagttcgacgacgccgtcgccgccgtgcccgagtccatcccggtgccgaacgagctt
gccgaggtgcgctggctcatcgaggagctacgggtcagcttcttcgcccagaatctgggc
accgccgtctcggtgtcagaaaaacgggtacgccaggccctgcagggggcccagcgtagc
tga
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